XLOC_038322 (gene) - C. hemisphaerica

Overview
NameXLOC_038322
Unique NameXLOC_038322
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_354:279343..289034+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038322 ID=XLOC_038322|Name=XLOC_038322|organism=Clytia hemisphaerica|type=gene|length=9692bp|location=Sequence derived from alignment at scaffold_354:279343..289034+ (Clytia hemisphaerica)
AATAACGCTAAGAAAGTTCAAATCTTAATTCAAACAGTTTtatgtttgtt
tatatttgatgttcgagaaaaaaatcttaacCAAACTAGAGGAGaggaat
atttttaactttagaTTTCAACGGGCAGATGATTGGCAGATTTGTCAGTG
GTTGTAATAAGAATATAATAAGAATATCAATatcaattttttctcaaatt
cagaGAATATTAACTTTGACTTTAAGATTTTAGACATGTCAAAATACTAC
CTTTAGAACGTCATGGTTTGCataaattttcaattctttttttaactCGT
TAGTTAAAGAACTCACTGATGGACTACTTTAACGACATACATTTTCGCGC
AGATTTCGAGAATTAAGTCCCAATGTAAATTTTGAAAGATCTTATCTGCG
AAATTCTATTCAACAAAATCGATAATACAATcagcgaaattaagtcccca
cgaaatttaatctccACAGAAATTTATACCATTAAAGTAAAAGTTGTAAT
TTCAATACTTCTTTTAATatacaaattaaaaatattacctatttgaaaaa
aattagggTCGTTCGCACTATAAGAACAATAAGCCAATTTTAGTATTTTC
AGTTTCCACCATTTACACTGTGTCCTCTTCCTCTTCATTCTCAGCTTCAT
AACCTTGATTCAAAGCATCATATCTTAATTGTCGTCCACCTCTTCTATAG
CTAGATTGGCTGTATTGATTGCCGCGTCTCTTAGAATATATAGGCTTCCT
AGCTATATGTCTTCCACCGAGAGCAGAAGAGGAGGATAGACTTGCATTTG
TCGGAAGTTGGGGTAGGAATCTTCTGTTAGGTAGAATTCCTTCTGTGCTT
GAATGTCTGCATAACAGTCGTTTGACAGACTATTGAAAGTTGGTCTGTTG
GCAGCACCATGATTTACAGACTTTGTTGTCAGCTTTCGACGTCCGATACA
CATATTCATTTTCATCGGTCGGAACCGGACAGacataaaacataagaaaa
aataactcaaaaatctacaggaaggaaaaataactcgagaatgtaaaaga
aaaaaaaacgagttaaaacacgaaataactcgaaactttaaaggaacgaa
aaaataactcgagaatctacaggaagcaaaataactcgaaaatttaaaag
aaggaATAAAAAACCGATTTGAAATTAAGAAGTAACCCCAGacatttgaa
ggaaaaaaaataactcggaaatttaatggaacgaaaaaataactcgagaa
tctacaggaagcaaaataactcgaaaatttaaaaggaTAAAATACGCGAG
TTATAACTCGGGATTTCCGAGCCTCCTTATTTAAGAGTTTCTTAGCTGAA
AGAATTTTTAGcgtaaaaaacttaatttttgcgagggattatatttcgcg
aaaaaggcgaaattcgcgaaaattcgcgaaatataatcccggCGAAAATT
TATCCCCTTAAGGTATGTTATCTTTGTTCATAATTTCCAGATACGTGATG
GTGGTGCACTCTGTGAATATCTTTGCTGGCTCGAGAAAAATGTAAGCTTG
ACTAATTATAGAGGTCCCCATTACACTAATAATGTTTCAAGACAAATGTA
AGTCTTGctaattgaaaaacatttttttcgtgCAATATTCTTAGAAAaga
ctacacgtttttctttttataaggaacacgtttataaggaactcgaggct
gaaaatggtccaaaaaataaggaatttttaaggaactgctcaggctgaga
ataagaaaacaagttttaaggaacagtaagagatggttatccaaacttag
cagctatgtaaataaggaactcgataaggaactttgaggctgaaattctc
tgtaaaaataaggaactcagaggctcagagcaaagttttaaggttcctta
taaaaaaaacaacgtgtatagTAAATGCATAACTCACCAATTCAATCTGG
CCCAGCCTTTGCGAGAAGTTACAATAATctcaaataataataatgacaGT
TTGTTATTTTGTTGCCAAATTCTTCTTATTGACGCCTATagtaatttctt
taattttgttaTTTCCTTCAGTTCAACACGAATATCAATGAAGCTGAGGC
AGCGGAAAAGCTAGATAAGCTTCGTAGGTATGGACTCCAAACCATCATTA
GCGAGTTATGTGTTTTCTTTAGCGGAGACGGATGTTTTTCTATAGCAACA
AAatacataagaacataatgcttcAATTGTTAAAAtatagaacaagttaa
gaacattttcaggctttatgaaattgttcaaaaataCTCAAGGAATtgta
aaattaagaacattttaagaatattaaaaacaagaaggcgaagtttttat
ttgacaaagGACGACAACACTCCTACAGTTCTCGATTATGCAATTTCgtt
ttttatccaaaaatgaaaatatatataactATTATTTTTCTACCTGACAA
TTTATGCAGCGAACAAGATAAATTTGTCAGCTTGAGTTTCGAAACTATAT
CGTCAATCGGACCAAATTGTGCAGTTATCCATTACAAGTAAGCAATAATT
TTATAACAAGATATGGTTCGGTATACACCTATTGAGACAGAAGTTCAAAT
CCAATTCTCTAACTGAACATCCCAATAAAGTAGAGAGGTAATTTTCAAGA
ACTGTTACCTTTGTCGTCAATAACCCCTCCCCTCTTCTCTCCGGTAAAAA
AAGAGCATCCTCCTAAAAGATTTTGAGCAGAGTGATATATCCAttagttt
tttggtttttacatggctattatttttatttcaaatatacAAGGCGCATA
GTTCACAAATCAtccaaaattttaatatttatttcttGCTCAATGAATAA
AACTACAATTTGCTGTTTTTAGACCAGAAATGGAGACAGCGAAAGTACTC
TCAACTGATATGTATCTTTGTGATTCTGGTGGCCAATATTTGTAAGTAAT
TAGGTTTCAGGGTAGAGGTTGGTACTAAACCAAAACTACCTCGAACCAAA
GTGAATGCTGTTCAAAACTCGAGCGAAGTATGTGAACaattcaaaaaata
gttttctaATCTCTTAAGTCAGTTTATTACAAGTATTTTGCTTGcttttt
gtttgtaattcttGAAGAAAATCGAAAAGTCTTGTTTCAGTCAAATaggg
ccctgagacgtctcagatgctGTTTTCAAAGTGTAGATCAGGAAGTCTCG
GACGAATAGTGCCGAATCCGTGCTACACTCGTTTCATCTCAGACACATAC
CATCATAATATGATAATCTTTGAAGAGTGTTAAAATTACGTATATATGTT
GTTTTTACCAGGGATGGCACAACAGACGTTACAAGGACCATACACTTAGG
TACTCCAACAGACCACCAAAAGgttctctttctttcttttcgcAAACATT
TAAAATTTGTCTAAAATATATTATTGATGGAACTTGAATGATTATGTGAA
GTCGAGATCCTAACCGAtccaaattttatttaatttgatagAATTTCAGT
TGCCATGCCCCACCCCTCGTTAACATCTTCTGAAAAACCGAAAGGGGTTC
GATCATTACAATTGGTCACTGAGGTTTGGGTCGGACTGTTTTTACCGCAC
TCGATtacttgaattttcaaaaagtgacaaGATTATGACTGGGAACCAGA
TTAAATAAAGAGCGTCATAATTTAATGTTTTAGGAAACGTATACGCGTGT
TTTGAAAGGCCACATCCAGCTAGCCCGTGCTGTATTTCCTAAAGGAACAA
GAGGGCACATATTAGATGTTCTAGCCCGTGCACCATTATGGGAGATTGGA
CTCGAGTATGCGCATGGGACTGGGCATGGAGTTGGTGCTTTCTTAAATGT
TCACGAAGGTAACCCTATGAGAGAACTATTTTATCATCTACAGTAAGTCT
GTTCCAACAAAGacTGTCTGTAAATTTTGATACATTGCTCTTGGTGTTCA
GATTGATATCTTTCTTAGATTGAAAGTTACGATCATTGAAAATGAATCTA
TTtgccaattttcgccattttttacCTACTTTGGAGGGATGTATCTTTTT
ACCTATTGCATTAGAATgatagaaatttgttctttaaAAATCTGTGTATT
GCCATTTACAGGACCCATCGGAATCAGTCCGAAGAACAGCGAGGATCCAC
CCTTAGAATCTGGCATGTTTTTATCTGACGAACCTGGTTATTATGAGGAC
GGTTCTTTCGGAATCCGAATTGAAAATATTATACAAGTTgtagagaaaaa
attaaaagtaagTCTTACAATCCTTGTACATCAAAGAGAGCTGCTTTTGT
Ttatagtttttggacctaccccggtggggtggaggtcctataaattcacc
tctgtccgtccgtccgtccgttcgttaccagcttttctcgagattgaatc
ataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaac
ggctaaaaaacgggttttttggactttgtgaaaaattggatcattaattt
tttctgattttttacatgaaagtagggtaccatcataggtaaaagatcgc
tcaagcagatttttgcaaaaaaatttatttggcttaaaaaacgcatgttt
atctataagaatcactattaataagcatacaccaatgttcttagtcaaat
tactcaatttttttaatgagatatatgttttttttttgctcatgagggct
tacttttaaagaatatgtgtgttagCCATGAAATTTTCGTTGCTTTGCgt
gttttttagaaaaactggccaaattcgatatttttttataagcacattat
caattacttaggtacgttagcttttctcgagattggctctttcattcttc
atgactttttgcacaaagatgcataaccaTAAACtgtcgaatgtgacgga
gcccaatttttgaaaaaaaaaatgttttagggcaaatttgggccaaaaac
ggctaaacaacgggttttttggactttgtagaaaattggatcattgattt
tttctgattttttgcatgaaagtaggttaccatcataggtaaaagatggc
ttagggagatttttgcaaaaaagatttgttggctcaaaaaacgcatgtcg
ccgtgtcaattcaagacagccttaagtccattttttccattttgagataa
ttgactttaaaggttgAGATGTGTTGGGNggaggtcctataaattcacct
ctgtccgtccgtccgtccgttcgttaccagcttttctcgagattgaatca
taggaatcatctGATTTTTGgaacaaaggtgcaaaatggtagtggccaaa
atgtgacggagcccgattttcgaaaaaatatttttttgggccaatttggg
ctaaaaaacggctaaaaaacgggttttttggactttgtgaaaaattggat
cattaattttttctgattttttacatgaaagtagggtacNNNNNNNNNNG
aaatttgcactaaaatttaggacttaaggctgtttatggttgatatatta
tggaacattctaaattcttattttttttgaattgcaaaatacacctattt
cccattagaattctgtggacttaaggccgtttttggaaagcgtgcatgct
gaaatagggggttatggtctttagtcaattttcgaaaaaatggacttaag
tctgtcttgaattgacacggcgatgtttatctataagaatcactattaat
aagcatacattaatattcttagtcaaattactcaatttttttatgagaca
gatgttttttttctcatgagggcttacttttgaagcaattgtgtgtttag
acatgaaattttcgttacttggcgtgtttttatagaaaaactggccaaat
tcgatatttttttataagcacattatcaattacttaggtattagcttttc
tcgagattggctctttcattctttatgattttttgcacaaagatgcataa
ctataaaccttcgaatgtgacggagcctgattttcgaaaaaaaatgtttt
tgggcaaaaatggattttttggactttgtgaaatattggatcgttgattt
tttgcatgaaagtagctAAAAGATgtgtcaagcagatttttgtaaaaaaa
aacttttcagctcaaaaaacgcatctttatctataagaatcaccattaat
aagcatacatcaatgttcttagccaaattactcaattttttgatgagata
gatgttttttgtcttgaatatgaaagaatatttcaagagcatgaaatttt
ggtttctaaacgtttttttttataagaaacaaacgactaattttaataag
tcgtcactatttgtgttctgaatgattgtttaacgttcatatgctcacgt
agatatcaattatatatgtgttaaatgcccaactaggtaggtccataaaa
gtatcacttgtcttCTATTATTATCACTGACTGTTCAGCCAAGGTATCTT
CTAGtggaattagtatatgtaatcacatgataacgagtgcaattcgaata
taattgcacgagtgatttttttgttattaattttccgagtccgaaaggac
gaggaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gtgcaattttcgaattgtacgagttattatgtgattacgagctaatcgca
caatggcttccACTACTTTTtaccagttaggaaagtaaattagtactagt
aatcgtcagtaaacattcgaaaacctccttttttcttttgtttaaaaaga
aaacattgcagtgtaatttttctttgttttcaattaaaagaagctactgt
aacgtaaaatttctttgttcttttttatattgaagaaaaaaaatgtcttt
gttttttattatatattaaaaaaaagtctccgtctgacacaggacttggg
agagaaaagaataaggggacaaaagtgtccccccgccgaagagtgcaaaa
agtggtaatagtgcaattaacgattaattgcactcctctaaaccaatcag
attcgagtaattttgcacggctgacgattacagaaattacactgagagtt
ttatattttctcttctctctgtgtctttcttttattgttgtttattgatt
tcctttctcacaaaatgaatttcgaatgcaattaaaacgttcgatgcaaa
aaaatgtaaaaaaaaacattaaaatcatttttgtaaacattggcgcagca
ttgaagagtgtgattaacgattaattgctctctacagaatgcaattaacg
attaattgctctctttgagggcgtgccaaataagaaaaaataacccatcg
tgcgattaaccGTTAAAGCATTCACCATACTATAACTGGCTAAAAGGTAA
AGAGTTTTTGTACCAATAGCTAACACTTTTTAGTAGGAGCGAATCGTCTC
TCatcagtacacgtttttttttttattagaacacctaaaatttggctgag
cctggatgtgcttatttttttagcaattttcagcctaaaatgttcttaaa
tgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgaggctgggcatgttcttaagatgttcttaatttttcgacgaatttca
gcctatatgttcttataaactaggttctaataaaaaaaaaaacgtgtatt
attgGGAGACTTCTGTGTTTAACTAGCAGCGGGCTAATAACGATTTATTA
TCCACGATAACGATGTATTTTCTTGTTCATTTCAGCATAATTATGGTAAT
AGAGGTTACTTAGGATTCGAAGTTGTCACAATGGTAAGGTTCATTTCATT
TCTACTATACCAacataattgtttttattaacGAATGCCACCCAGCTTTA
GTATGTTTCTATGGTTCGCTCGGACGTGAGTAACCTCTGGAGGAACTATA
AGTCAAATAGTGCGACACTTTAATAGTTTAATCCTGGCAAGAGCTGAGAA
AATTACATTTAAAGGTGCGGAGACTATATGAACAATATTTGcagaagaac
attttaaaacgaagtatttttttttctttttaggcaCCCCTTTACAAAGA
ATTGATTGTTCCCCAACTTTTATCAACAGAAGAGGTAActaaaagatatt
tctttatttttttaaccaTAGCTTTGTACACAAATTACCTGGGTAAGAGA
GTaccccttttttataagaacaataaggctcatacttgccaaaaaataag
aattttgaaaaaataaaaaataataaaggttgggtataaatcctgaaaaa
tctcaatttcaCCTCATTAATAAGAACATTATAAAGGTCAGCCACTGCCC
AAAAGACCTTTGTTAAAGTTCCAAACATATAGAAATAGGTGAAACTTAGA
AATCGACTCCATTAAAGAAAATATCTTCTGTATTTTCCAATTGGTGAAAA
TCTGTGATTTCACCCACGTATGCTCTCTGAGCATTTCGCACACAATTCTT
CTTAGAAATATCTGTTTTTTATACATATCTAGCAAATTCTACAACAATTA
CAAAACAAATTAAAACCCCCAACGGAATAAATAACAAAACAACAGATAGT
TACAAAACATTGAAGCGATAAAAGACCATAAACTATGTACGATAAATGAA
TTAATTAGATAAAAGTATTCTCTTGATATTTACAAATAAACTGACGGACA
GCGGCAGTAACAAACATGATCAGAGCAATTTAAGGcttaaagtgccaaaa
aaataagaacagtcgagcCCTGTCAAaagtttactggttcttataaaaaa
tgatttAGGGTTTTAGTTCTTGTTTCAGCAGAAGGTAGTTTTTTGGATGG
AAAACGTTTTCAGTTTACATTTTGGAATTAGCCATTATTTTGATAGAaag
cttcttataaaaaaactttccaTTCCATCATCTCATTTTAGGTTGATTGG
ATAAATGACTATCACACTGAAGTATTTGAGAAAGTGGGAAGTTATTTGAG
AGACAATAATAAAGCAAATGTTGTTGATTGGCTCAAAAATGCCACATCAC
CTTTGGGCTAAAAGTATTGAAAATCTACTTTTAGTGAATTTTAACGgttt
ttttgtgcaattttttaatttttacgtttattaaattttaatgTCAACTT
TAAGATAAGTTTTTAGTCATAGAAATTAGCAAAATATATAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061041TCONS_00061041Clytia hemisphaericatranscript
TCONS_00061042TCONS_00061042Clytia hemisphaericatranscript
TCONS_00061043TCONS_00061043Clytia hemisphaericatranscript
TCONS_00061044TCONS_00061044Clytia hemisphaericatranscript
TCONS_00061045TCONS_00061045Clytia hemisphaericatranscript
TCONS_00061046TCONS_00061046Clytia hemisphaericatranscript
TCONS_00061047TCONS_00061047Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00061046-proteinTCONS_00061046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:279343..289034 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.65	8.74	7.81	8.39	12.88	9.5	17.36	21.84	21.52	18.88	21.94	17.6	23.61	25.62	11.54	10.24	10.49	10.15	5.01	5.16	6.15	6.35	11.22	12.04	17.35	27.8	9.43	8.06	11.62	13.82