XLOC_038524 (gene) - C. hemisphaerica

Overview
NameXLOC_038524
Unique NameXLOC_038524
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_358:581120..584953+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038524 ID=XLOC_038524|Name=XLOC_038524|organism=Clytia hemisphaerica|type=gene|length=3834bp|location=Sequence derived from alignment at scaffold_358:581120..584953+ (Clytia hemisphaerica)
CTTTTGAAGGACTACTattcattttaaagatttttaactaaaattttggt
aacaGCGTTTACATTACAATAAAAATAATGATTAATTGGAGATCAACAAA
GCCTTTAAAGGTTCTCACTGTAATCTTGATGGTTTTGACTTTATTATACT
ACAAGAAGGATCTGCCCAAGCGGAACAAAGCCACAACAGAGTGAGTAACT
TTTTgtctaacctgataacagatagttagaattttcttacgcgcacggta
taCTTCTNCTACAAGAAGGATCTGCCCAAGCGGAACAAAGCCACAACAGA
GTGAGTAACTTTTTgtctaacctgataacagatagttagaattttcttac
gtgcacagTATACTTCTAAACGCGCTTGAAAATtaactactttaatcgta
gaaattttagcgggactaattttagcgttttagcgagttttccctatttt
cactaaaataaatctcgctaaacaCGCCGAAtcaacagatcgctaaaatt
tatccgcgcgaaatttctggttatactgccttgatacatttttatcaata
ggaagggtttcagtgcaaagaaatgctagaaaacgaattcagtcaataat
gtaatacgagtattcgctaaaataaatccaaaaaaaatcaagattttcct
gactcgctaatatacgctaaaattcgtctcgctaaaatttctacgattaa
agtattaaGAATCTTGTTTCACGCCGAGAtgtcaaaagttgaattttttc
taaTATATCGCTTTATATTCCAacgcaatacaccttttcgacagtagtcg
cgcgggcattttttgtccgctttatcccactaaaactgtCCCAATCATTT
TTTaacgcatttttctattgtctataggtgcgaaacaAGGACtgagacgg
ttttagtgggataaagtggACAAAATATGCCCGCAcgactacggttgaaa
aggtgtatctAGGTAGCGATGACTTTGTTGTCTTTCCCAGTCTTTTTTAG
TGTTGCGCGGTCCTTACGAAATCGATGTTATTCATTAGTTTGATTAGTTT
TTCGTCGGGCTTGACTGAccctaaaatctcaaaaatcaaaataaaaataa
aattgatttcattttgTTCTTGTCTTTAGGGCAGAGTTGAAGTATTCTAG
ACTTTACCCCGATTCTTAATACTTTGGacccactgttcttaaattgttct
tatatgaaatattcttataagaaatacTGTATGCGACACTATTCCCATTG
ATGTTGTAAAGTTATTTTGGCCCACCTAAAATTTAAGcactttattttta
ataaattctATATGTAGAGTGTATGCGACACACTTTTTCATTAACTTTGC
TAAATTTTAACACAAGCATACATAAGCTATTTTTGCCCACCAAAAtgtta
gtttaaaaaaaaatctctcggcaaaataattttcttttttaagtgtCATG
TATTTTACATaaccttttcaaatttttataagGAGTCAACCAGATGATTT
CCAACCAGATGAATTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAG
GAGATTGTCCATACCCAAAATATGTTGAAATGGAGAAGCTAGAGAGACAG
AAATGGTTTCCACGATATTTGCACCATCTGCAGAAAgtcaatttgaagaa
aattgataaatatTATTGGAACGATAAGTGTGTCAGGTATAAAATAATgc
agtctctttaactcgaatgtctccttaagttttgaagaaaattgataaat
atTATTGGAACGATAAATGTGTCAGGTATAAAATAATgcagtctctttaa
ctcgaatgtcttcttaaAAGTTGAATCAGTTTTTTCCTATCTAGAGTTAA
CAATGTCATATAAACCTTACTCCgcaactcaaaatttccttaactcctta
actcaaaacaaatttgtgttccccgtgcatgttatgagttatggagactt
aaTTTTCTAGTCTATGCAATCTAAATTTGCCAGGAATGCCTTCGTTTTAT
AGGtgttaaatttttaagtttcAAAAAGGTGTctgaaaattatttatttt
catttttaatatcATAGATGGTGGCACCCAAACCCGAAAAATACCTGGTC
CTTTTATCCACATCGTAAAAAAACGTGGAAGCCCGCCGTACAACCAGACC
CAAGTTTTATCCGTCCAAATTGTACTTTTGGACAAGAGCTGAAACCACCG
ACAACCTGTTCAAAAATGCGCCAACGATTATGGGACGAGTTGGATAAAAT
GGGAGCTGTTTATTTCCCGAGAAGTGGAACAGAGTTGGGTGTTTTAAGAG
GAAGTTCTTATTTAACTTCAGATGGCGATATAGACATACACGTAGACGTC
CCTCAGGACATATTATTCAAAAGATTGCGCAAGGTTTTAAAAGGGATTGC
AATGGATCCGGGCGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAAGCG
GATGTCCACATAATAAAATGGTTTTTAACGATTTCATGGTTGATGAAATG
ATGGAGGAAGGGGGTACAAGACCTACCCTAAAATCTGTATGTACGTGTTA
TatgaattctgaaaaattatCATGTCATAAAGATGCTAAGAGCCGAATGT
ATGGTCAGTACGGACCTTCCTGGTTTGTACCACTTCACGTCAAATACTTA
GATGCTCCACACGGTGcacatgtaaacaaaaaatgtagAGAAAAACTGCA
AAGCCTGTTGTCACCTGATGGATTTATCAACGAAAAGGCCGTCAGAGATC
TGGATCCTAGTATTGTGTATGGCGAAGATGAAATGCAGATGATTTTAGCG
CAATTAAATATACTTCATTACACGATCAAGACAACACTAGAGCATAAACG
CACAAAATATAAGAAAGGGTATTTCTTTTTTAACGCCAAAGAAAATTAAT
TAGACGTTGTACGGCTCTTTTACAAATTTCTAGATACAGTGGACTGTCGC
AAATTCAAACTTACACTATTCgagttttaaatatttccctcttatagggg
aatatttgttaaaGCGGCTTTTTCAGGATAGATGCAAATTCAGAAGCGGT
CGCGTAGTCGATCGCGCGATCTGAAAGCGTGCTTTGATGGAGAGCTATAG
AgatggactcactcacaaagataaaaagcagCGCTTTCTTAAATAATTCA
AATACGTAAGTGAAAGGTGAATATAACTAAGCGTTTGTAAACATTCGGCG
TGAGAGCTTTTAATGGCTTCCAATTTTAGAAGGATTATGGCTTTTGATGT
GAAACTCCACTTGCTGCTATCTTtattttatcttgttttttgGTGCTTTG
TTGagtatttaaaaaggtttatttgTTTACTACTTAGTATTTTATGTTCG
TGTAGTTTTATGAATGCaccaatgggctcttccagaaaaaatccgttcat
ggggggtggaggatgtattatttttttcatgaattacccctggacatttt
gattttcaacccaCTGggcacgggttatacccctggacaaacatcaaatc
aaccccgtggacacaaaaaattaccccttgacattggaatttaccccctg
gacattggaattttttggcattttttcaatacccctggaaaattcatcct
ccaccccccatgaacggactttttctggaagagcccgaTACATTGTTAGT
GCTCTGTAGTATATACAATTAAAGTGTCGACTTTTTTCTTCAACACCGCA
CACACCACAACAACAGCAACACAACCCTTAACTACACAGGTCAGGTATGA
TTTTTTCTCCCTTTGTAAATAAGTAGTCATAAGTCTTGATATTAAGATGA
TTTGTgccaaacagtcagttttaccAAGCATTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061398TCONS_00061398Clytia hemisphaericatranscript
TCONS_00061399TCONS_00061399Clytia hemisphaericatranscript
TCONS_00061400TCONS_00061400Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00061398-proteinTCONS_00061398-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:581120..584953 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.52	2.85	2.13	1.72	1.21	0.77	0.99	0.97	0.45	1.12	0.74	0.72	14.3	15.19	7.91	6.52	1.85	1.26	8.36	7.33	0.58	0.56	2.88	2.05	0.97	1.05	0.71	0.52	1.72	1.72