XLOC_039972 (gene) - C. hemisphaerica

Overview
NameXLOC_039972
Unique NameXLOC_039972
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_40:2957..11179+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039972 ID=XLOC_039972|Name=XLOC_039972|organism=Clytia hemisphaerica|type=gene|length=8223bp|location=Sequence derived from alignment at scaffold_40:2957..11179+ (Clytia hemisphaerica)
aaaaaatcttattgttaaaatttttgcaagcaaattcaatttttttaaac cttttgtGTATGAGTCATTTGTACAAATTGAGTCATTTGGTCTCTTACTC GAACAATTGAGGTATTCATTAAAacaatttgattggttctcCCTTTAGTC ACGTGAGTTTTGTTCCTATTGTTCTGTTTGGAAGGCTTGGGACCATATAT ACAGGTAGCACTCCCTATCTAATTATTTCAACAGCCAACTTTCAACTTGA GAGGTAGTCTTCTTAAAAAGCAATAGCAATAGAAGAATTACTGGTGAgta ttatctttttttattttgaacttgGGTTGGTTATTGACAGTCATCGTGAC CcatgaagtataagcccaaagggctagatagaATAaattcttcaaccttt ctcaagcaagaaaaagtgaagccttaaaatatgcgccgtatttttgacga cagattgaatctagcgattcctttgttttcgagtggtatcttttttgaaa tttaagtgTAAGTTTtatagtttcaatctgtcatttgtgtaaaaaccagg cgaactgcgctaggccgcgcaactttggtaggatttttggtaagcttcaa atcctaccaaggagatttgattttagcccttcgggcttatacttcattga ttgTGACGTACTCTGGCGCTCAAGAGGTTCAGCTTCGAGTGAGCATTGTT TTCTAAGTGTCGTTCAGGTGTCATGGTATACAGCTCACGTCTGTCAAGTC GtagtgtctgtcagcgccgtgattctTACTTCTCCGGGATGACTAGAACC TACCCCGAATGCAGTCGGAGGGATCTCATTTATCTATCTATTTGGGTTGA ACTGtataaaaaagtaaagaaagtcacaatcttttgatttatttttaaaa tatttgagtGATAGAGAGAACGTAGCTACACGtttctctttttataagaa caaactatataagaacataaggctttaatGACaagaattttaagaacaag ttaagaacatttttaggctttgtagactctaaaacacctgatgTCTTAGG AAGACGAAATAAAATACTACGAAAATAggtaaaataagaacatgttaaga acatcccaagtcttcttttcttataagaaaaacatttatttttctttgga gAAACTTTCCAACAGCATCATTGGTGGTTTTGAGTGAGCAAGActaaaaa tcaattatttagAGGCTTTCTTATGATAATTTAGTGTGAATAGTTTTGGA ATGTAATTTTCATTGCGTTTCAAGTAGGGatgaaaacaaaatcaattttc tagTGGGGGGAGGCCCGAAatggtcaaatttttcattggATAGGGATAAA TCACTTGGCCTGTGACAACAAAGCGGTTTTACTTTCTTTAAGAGTATTTA TATTACATTTTTCCCCATTTAATTTTAGCTCCTGTGCATTATGGTTTCTC TACGAGTGCTCATCGCGTTCAGCGCTCTGATTGCTTTAGCATCTTCTCAA ACCTTTGGTGACGGAACCGTTGGTGCAAGTAAGACCATCCTTTCAACATT TTTCTAACATTcaaaacgtccatataacgttagacaaacgttgaaacaac gccaGCTGGGTCATGTCTGAAAAGTCGCAAAATAGATccttattcttgat atgcgtaagttatttttctagcggaaacacccgaaaaaatccaggactct gttactaaaaataaaaacacggaggtcaaaatccggcttttttcgagtgc ttccgttaaaagctatgacgtcatcttgatttacgcatatcaagaatcgg agtttttgatttttttaaatagtgATGCAtggtgggattgtttcgggggt attacaatagaattcacTCGAGGAGTtcctctaaaatatttttattgtaa tactcccgaaacaatcccacaatgcatcgcatttttagaaaaatcaaaaa ctccgataagatctatttccttaaatttaaaaggtttttttaaacGAAGT TGATACTGTTTGCTTATTCATTAactttcacattgaattgacacagatgt ggagtaAGATTGTGTCTCAGATGAAACAGGGAAACTCAtgtaaaacaaaa acttttaagaCTTTGACGACTGGTATTTTTCACAAATTCTTTAATGATAA CACGATGTTTTTGGTTTAATTAGTTTATTTGCGTATAGATTGAGCAATAG AAGGCAAATATAGTAAAAATTTCTACCTTTTTATACCTTTTCATTAAGTT TTTGATATAAAGTTGTTTTTGATCCCACCCTGGTTTTTAACAATCTGGTT TTTAAAACTATTAAGAGCGttcagaccccccccccccccgcNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccc cccccccccggttacTAGGTTTGCAAGCTGATAAGGGGGTGCCGCCCGAA TTTCGATCCTTGGAATTTTACCCgaactaaaaaagagaaaacaaaggaaa attttgtgaattttgcgACCTTACTAAGACAAATTTTGACTAAATTCCGA TCTTTCCGggtgtgaaaattttgaaatttttctatttctccgacccttag tgggactgaaattttattttctgatttttccaacccttagcggaactttg gaaaatttaaaaaatgtaccCTTACCGTTCCCtctatttgcctaagtacc ccccccccccgggccccccCCCAAATTAGTTAGACAATCCTCCTATCGTc aacacaagatcactaaaaaagggaatagatTAGGAggtgggataaatttg aaaacggtgGTTAACCttgggtggagtaagcagtggcgaaGGAATATAGT TTTCccgtaaaaaaaaacatgttcaaaaatagtcaGAATGTATGAATAGT AAATTTTTATCAGGTTTTGACTTAAAATAATTTCCTTCTTTCTTTCAGGT TTCGAAGTTAAGTGTGACGACACACACTTTGCTGTCTGGTTTAACAAAAC CGCTTTGGATGAAAGACAAGATGGTACCAACAACAACCGAACATGGCAAA TCTATTTCGAAGGTCAACGAGATGATGCCACCTGTACAACATACCATTGG GATACCAGTAAAAACAATGTCAGCTATAATAGCCTTTCAAACCCTACAGG GCTTCCATTTAATGTCCAAATCGGTGCACCAGTCAAAAACTGTGGAATCA ACGTTTTTGCTGATGCAACACACATTATCTACAACACAACACTTATTGTT ACATACGGTCAAAATCCAACTGCTGAAATCGGACGTGAAGAGTATGACAA ATACAATGTCATGTGCTTGAGAAATCGAACGGTTAACGAAATGGTCGATT TTGATGTTGAATTTCGTCAAACTGGAAATGACGCTAAGAGTAAGTTCAAA TTCATTCTTTGTCACGAAAATCACTAAAAGTCGAAGGAAAACAAACACTT CACGGTTCacggtttttataagaacaaactatataagaacatctcGAAAA CATCCGAatgcttcgaaaattttggatgttcttataaaaacacacAATTA ATCTGTTTTTTCCTAAACCTAGCGTCATGCCGTGACGAGGAATAGTGTCT TCCAGCTTGCACGGTACGTTGTTCGGACGTTCAACCAATATCTTGAAAAT GGACGTTATAAACATTAGACGAGAGTTGAAAAAAGTTGTGTGCCATTTGG ATCAATGGCTctttcaatttctattttttagtaACTTCGAAAACTACAAT AGTTTCCTTTCCACACTTTCATAAACAACGTAATGATTAtctgatatttt attttttctattctttttctAGATACTACCGAGGATTACAGTTTCACTTT CACCCACACTGATATGGCTGATGCAACTACATTAGTCTACAATCTTGGAG ACTacatcaaattcaaaatggtcTCAAACACAGCGCAAACTGAAGTAAAA GCTGTGATCCAAAGATGTTGGACTACCACTGACGGATCAGCCAACTCGTA CACTTTGATCAGCGACAGGTATAATCCATTTTTATTTGGATAATAGTAGT CCAAaacttaaaagttttatttttccataAGTGTTaacgtttcatatcag acacatattccatatcaggacagtgtcagCCTATTGCTGTATTATGCTGA TGACCCGGGGGGCACtcaattttgaaaacgaccgtaagTTCGGCCAAAac tcaggtctctaaaatcggacccttgcagtgcaggaaaaaattggctgaaa atcgacccttattgtgcaatttttcaaaaaattttgacatttcTCAAATt ctacacccttacagtgcactttttctcacttgctcacaaatcaaccctta aagtgcactttccaagtccaaaaacctacccttaagggccgcacgtccgg taggtcacttacctggagtgccccccccctccTCAGAGCTGATGTAAGCA AAAAGTAGTTTTTtgctctttctgaccaatcttgctccacatccatgtca atccaatgtgaaaaagcttgtgaaataaaattgatgagtaagcaaacgat atcactcttatttaaaaacaaaacatttaattttcaccatcaaaaattga ataaacttaagttgtttttcgaaatttattgGCAAGATATTCTGATATTG AAATGCAAATCACTTAAGAAAGACCAGTCGGTAGACTAGGAAcatcaata aaaatatattcacaGACTGAATATCCAGGCTATCGTTTGTATTGAAATAT AACATTCTCAAATCTGTACGTACAATTCTGCACAACTGTTTTCTTGTAAA CAAGTGTCTGTAAAAGTGTTGAAAAACTTTGTTGaacggaggtttgaaaa aaaaaactctaatCAAAATAATTCTTTGCTGAGATTGATCAACTGCCTCC AGGTCTATATATAGCTCGGTGGTCATctctcaaaagaaaaagattataGA TAGTTTTGTGGAACATCAAGTGTTTTATAAATTGAGCACTAAcccttatt tttctttatagatGTACCATGGAAACTGGAACTAGCTGGGTTAGTAATCC AAGTGACGCTGAGTCTGTCTTCAAAACCGAAGCTTTCAGATACTTGGCTG CCTCTGAAAACAAAATCTATGCTCAATGCCTTGTCCGTGTTTGTCTGGAT ACTCAAACTAGCGCTGAATGTACACTTTGCACTCCTGGTATCACCCGTAA GAGACGTAGTaccgaagaagaagaagaacccAGTGTTGGACAAATGGCTT TAATAAAATCATCAGTCTTCTACATCATTGAAAGAGgtaaaaaactgttt ttatgCTGGATTTTTATGCCCTTATAACTGAACTTTAGAAGGATAAGGGC TATACCTTGTGATATACCTTATCGGTCAAaattagtcggccttaattatt agttataaattttagtcacctcatcaaaatttagtcattaagggccgact aataattaagttttggccatttttaaatttctagtcggcccaaattttac tCGGCCttaatttttagtcggtcttaattttagtcaccaatcCAAAATTT AGttacttagggccgactaagttttggccgaaaAGGTATACATTTAGCTG TTAGTTCTGGACTCTTTTTATTTGTATAAAAAGTTTAGACAACaattagc ctagaaatctaagctaacTTGATTCAGccactaggataaatctgatggta agttgtgactgaataacaaAATGTATTCAAAGGCAAACtaaaaatccgta aatataaaaaatatttaaagcgTAGAAAATGCTTTAATTTctccttagcg aaagtattttTATAGGCATGGTATGGTAGTATCGGAAAAACatcagaaaa cgaaagtactcgatacagTGGACAAACTcattaaatttaatttgtttttc taccTTTCCTCGGTCACACTCGCCATGTATAAATATTGTGGTCgttttta aatcaagtcctcagaataccaaaaagtgacctttgaagtaacttgtcatt ttcttgacaaagtgacactatttaacaaaaatattgacagggtcaaTAAG TATGATGTTTGTAAGCTTTGTTACACCGAATATTTTgattatgctgaatg agatgcctttagtatgaatagatagaacttgtcagtaggaaaaaattggg aaggccagttttagagatatgaatcttatcaattattctattgtctttat gctgacaaaatgactaatttcgacagaaataacaatctgatgatgaaata caaagcttctcaaaccatttttaaattttgtaccactaattattttgatg ccGATGATACAAAAGGATAGACTTTGCcaccataatcaagctccaagaac tttgaaatggttgttttacgtATTTGGCACGTGACTTTAAatagatgaga caggggtgagcttactcttcaatatataatattcaaatgattaggagagc actctacgttggagaaagGGACAAAGCTCGATAACCCagatttatctggt cgctggtcgtggtcgcctgTCGTGGTCGTAATTTTtggtcgacgtttaga aactccctatAATTTGCTCATCTTCATTGTATTTTAAACAAAcacttcat tttttattattttgttctaCTTGATATGCGTAAATGAAAAACAGAGAGTG GTTATTATGCGTTTAAAATAAAGCGGATTTGGTTGAGTAGCGCAGTCACA TGATATGGACAATATACTTTTCGGTTAATAGTTCCTACagagtaaacaaa ggatggtaTAAAATTCGGGAACATTTTAATTATCATATAAGCATCTACCT TATAAGGATttaatcaataactcttgatagatggggatatacctttcggt aattagttcttacaaggtaaacaagggatggggcacaatatgagcatatt tatttttcttataagtatatactttataagaatcaaatcaataactcttg atagacagggATATACTTttaggtaattagttcttacaaagtagaCAGGG GACTGAGTACTGATTGCAGCATTTTTAATATGGCTCAGCTTTGCTTATTC ATCATAAAAAGTGACCGTGTCCGAACCATTTCTCATGACCCGaccaaaac ctttttttctatttcaccTCGTATTTTTCTTAACAGCTTTTTCAGAGCCG GCATTTTAGCAtactttttgcaaatatttggcgaaattttcgacttcaag tcgtcttgttttgaaagtgttatgcttaattttttcgaccattttcatca tcattttcataATACACTATTACATAAGtatatatacacgttttttatat aaggaacacgtttataaggaactcgaggctgaaaatggtccaaaaaataa ggaattgtttagcaactgctcaggctgagaataagaaaacaagttttaag gaacagtaagagatggttatccaaacttagcaactatttaaataaggaac tcgataaggaactttgaggcttctctgtaaaaataaggaactccaggctc agagcaaagttaaggttccttataaaaaaaaacgtgtaataataCACTAT TATACAAGGaatacactattcttataaaaaaagcgtgtattttttttaat ttgtaaacTATCATTGTCTCATTTTAGACACTCCAGCCCAAGGATCACAA GAATCAGAAAACTTTATGAGTGGAACCAAAGGAGTTGTTGTCATCATTCT CTTGGCAACTTTGGTGTTTGTTATTGCTGCTGCCATTGTCAAGAAAGTTT TCTTCAGTGCTCCAGCTGTTGTTGCATCACCAGTTGTTGCCTACAGTAAT AAAGCTATGGCTTAAATATTAAACACGTTATACAAGAACACAAAAAGTTG ACGCAACAAagtcaaaacatttaaaataattcaagctcttgaaaactttt tttttTGGGTCTACTGTCAAAATTTATTATTGTCCATTTATTGTATCTTC TATTATATACTAAAAGCAGAAGAAATATATTTTATATGCTATTATATTTG AAAGTTTTAAGTATATTGTCTTCGAAAATTATTTTTGTTGTTGTTGTTGT TTTTTTGTTTTTTTTGCGAATGATAGTATAAAAACCTTTTATCGTTTAGA AgtattttgtaatatttttgtttcaaacaGTTATCTTTTTGTCAAGAAAT GTTATTACTTGGTATGTAAAAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063750TCONS_00063750Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063750-proteinTCONS_00063750-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:2957..11179 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.75 22.9 30.72 32.58 114.06 80.5 66.6 76.93 66.51 87.28 56.8 57.62 1.3 1.22 0.34 1.14 3442.85 4463.37 0.6 0.46 10526.9 9769.09 3559.65 4118.81 5561.87 3809.25 4011.11 3758.89 30.59 22.17