XLOC_040408 (gene) - C. hemisphaerica

Overview
NameXLOC_040408
Unique NameXLOC_040408
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_415:346003..350535+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040408 ID=XLOC_040408|Name=XLOC_040408|organism=Clytia hemisphaerica|type=gene|length=4533bp|location=Sequence derived from alignment at scaffold_415:346003..350535+ (Clytia hemisphaerica)
GAAATAgctactttttttcaaatatagctaTCTATTCTAGAATTGATAGT
TTCAACTTCTCAACATATCGCACTCTTTGATCTATTGTTTTTATAATTGG
TTACAAAGGAGTGCCGCTCAGACATTTCTTTCCTTCATTCGTCTCTTATA
TCGCCATGGAAACGAACAATTAACCCAATTAGTTTTTTCTTCTCCTCTCT
TATCATCACGTTAACAAAAGAGATAATTGTCTCTTTAATAGGAGAAggat
cttttattttttaaagagacgACTTAATAGAATACTCTCTGTACTAGCTG
GTAATTATGTCGCTCTGACAACCCTAttgtattttgatttaaaagaacGG
CTTAATAAATAAGCATTCTCTGTTAATAAGAAATACATTGCTTTTAAAGA
GTTataacattttgatattttgtttagaataaaaagttgtttttatagAT
AACTGATACAAAGAGGGTGTGGTGGTCAACTCCGACAACATAAACGGGGG
TGATGAGAATTACACATGACAACTTCGATACCAACAGGTAAAGTATTTTA
CCAACAGATAAAGTATTTTACCAACAGATAAAGTAGCTCTTCGAATGCCC
CTTTTTTGAATTTAACCCCCTGAAAAATGGCGAATTTTCCCAGATTGCAT
GAATGTTTGAATCGCGAAAAAAAACTAGGGTGAATGTCTGAAAATTGGTC
CTCTGCGTGATGCGTGAAATGCGAATATTGTTGGCGTGATTGCGTGAAAT
GACGATTTTTCCCCGATTTCGTGTATgcatgaattgcaaaaaaagcGTGA
ATGAGTGAACATTGGTTAACTGGGGGCCTGTTAAAGAAAAGACACTCTTA
tgttttggatttattttagaatGATCTTCAAGATTCTTCTGAAATTTGTC
ATTcacaaaaaattgtattttttttttatttNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTTTAG
AATGATCTTCAAGATTCTTCTGAAATTTGTCATTcacaaaaaattgtatt
ttttttttattttttcttgggGGGGGGGTAGTCAGCTCCCACAGAGTAAG
GTTCCTGAACGAAAATCTTCAATGACTTTGAATTTTGTCATGAAATTTTG
CCAGTGTGTGGGGAATGTGGATTGACACTTTCTGacaaaattttgtcatt
tctaatgacgtcatcatgacATGATGATGtcaacaaattttgaaaatgtc
aagAAAGGACCCCCGTCGAACTTTTTTTCACcttcataattttctttgaa
attttgcatataAACTCAACTTAATAAATGATTTTTAGATGTGTCAATTT
TTTCTGCCACCTGCCAGATTCGTGTATTTTGCAGTATTtataaccaaata
caaaatatcTAGGAATTAGAGGCTAAAggcttttctgattttttgtgata
aaaatgaagaaacaatGTTAAGCCAAATCTGAAGCAGTATTAAACTTAAA
AAGAAGCTAAATGTCTCAATAAATTCTTTATTATATTAACCCTTCGTGCA
TCTTTGGGGGTCTATATTTGACAACTTTAGAAATACTTATTCAAACGACT
TGCAATTTTGCCAGTGTGAACAAAATATTTATCGTCAACTCTGAGCAAAA
TTTCgccatcatttatgacgtcattgcGTCACAAGGACGTCACCATCCTT
TAAAAAGGCTGAAAATAGGACAACCctcaaacttttttcacattcatatt
ttttactcaaattttttGTTGCTACTCCTTAAGAGATTAATTTTGAAGAC
ATATAATTTTGGGGATGAAGGTAAATTCTTTTGACCTGCTAtatgtgtgt
attttacaggcCCAAAAATGCATGCTCTAATTGCCAAATTTAGGCCCAAA
ATTTATATCTCTGGATAGAAATAAggtattgacttgaaatttaaaccAGC
GACAAGTAGTGATGATAGAAGCTTAATGTCAAATTCTCAGTGAAATTGGA
CAGGTGGTTTTCCAGAAAGTGAGCATTTTGGGTAAAATACTGAATGGTCC
ATGAAATACGGCCAACGTAACCGATTGGCTTGAAATTTTGTATATCGTCT
GGTCAAGACCTATCATAGGTTAAAATTTCAAGTCAAAAGCTTTAGTAGCT
CTTTTATTCTGGAAGGGGGTCAACGTGTATATCACAGACCGGTCAGTAAA
GTACCAAATACCCATGGGACCAAACTTTTTTCGTAAGTAAATGTTTTTAT
TCGACAAATCAGCTATCAGAAACAAGTTTAACCCGAAATAACCCAATTTG
TGATCTTAACAAATTTGACATTCTGGTCTGTACAGTAGCAACAAAACAGG
TGACTGACCTAGAATATTGATATTTATAATATTATTTATATATGATATTT
TCCAGGATATTTTGTGTCTTTCGGGTTTTTTCATATGTATTACACCCCTG
AATCAGTGACCCGGTCAGATACGCCCCAGTGAATAACCCGGTGAAAAATA
TGCTCTATAATAGCCCCAGTGAAGAAATGAAGCTGAGTGATCTTaaatta
tacacccctgtctcactgaccTGGTGGAAATTTCATGGTCAGCGGGAATA
AAATTGAGAACAAATATCCCAGTGGGGATTAAGAATCCCTTTCAATTTTA
TAACTGGGATAtttatttccattgttttcagtccaaaaaatccagtgggg
acgGCAAATTCAGACCAAAACTTTACAGTGGAGATAGTAATACTCCAGTT
TTCCTAATGGGGACGAAATTTGAGGAAATTTCCTCAACCGGCGACGAATT
TTGAGCTCATTTTCTCAGTGGCGcgggggtcccaccgggtctgttaCACA
GGGGTGTACTTATTTTGGTAGACTTTTCCTGTGGTACTGTAAGGGGTCCC
ATCGAAAAATAACCTCAACCATGTCTTGCGAAGAATGTTCGGAAAGTTAA
ATGTAGGAtgctaaaaaaacttttaaagatgatataaagtaaaaaatata
atgGAATTTGTacaatattttagtttttttaaaaagcgATATAATAATCT
CACAGACCTGTTGGGTTTTTTTTTAGCCTGTGGGGATAGAAATGAGGGAA
TGAATTTTAATGGAAGTATTGATATTTCCCAATTTTTAATGTCGGGGGAT
TTTTGTGGTATTGTTTTTTTAAGCGGAATGGTAAAACTACACTGAAATTC
ACATCAGGGATAAGATTGCCCCGAAATTTGGGgcaaaaactttaattttt
tccCCCCAAGAACGATTTTTAGGCCAATTTTCCAGTAGGTTAGTGGGTAA
GGGTCCCAGCGAGTCAGTTAGAAGGGGTTGTGAGAATTGaaatactattt
acaaattatttacAATTATTCATTTAGATGGGTAGTGACGAAGTGGTGGA
GGATAAGACAAAGGTTGACGTGGAGGATTAAGTGGNCGAGTCAGTTAGAA
GGGGTTGTGAGAATTGaaatactatttacaaattatttacAATTATTCAT
TTAGATGGGTAGTGACGAAGTGGTGGAGGATAAGACAAAGGTTGACGTGG
AGGATTAAGTGGACGAAGTGGTGGAGGATAAGACAAAGGTTGACGTGGAG
GATTAAGTGGTCGAGGCCAGCACattactgaaaaagaaaaacggaTTGAC
ATGTTTTAATCGATAACAAAAGGAGTTAATTCGAGGGTGGACACTCAAAG
GCGGAAATCTGCCTTTTTCCGTGCGAATTGCAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064439TCONS_00064439Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:346003..350535 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.06	0.25	0.07	0.21	0.34	0.2	0.82	1	0.81	0.33	0.19	0.64	0.47	0.88	1.74	2.6	1.86	2.45	1.15	1.42	0.62	0.9	1.02	0.86	0.21	0.61	0.61	0.28	0.49	0.72