XLOC_042249 (gene) - C. hemisphaerica

Overview
NameXLOC_042249
Unique NameXLOC_042249
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_472:334681..344010+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042249 ID=XLOC_042249|Name=XLOC_042249|organism=Clytia hemisphaerica|type=gene|length=9330bp|location=Sequence derived from alignment at scaffold_472:334681..344010+ (Clytia hemisphaerica)
GTTTTAGCATGTGAAGTTCATTCTGATGTTTTAAAGTTCTAGAGAAATTA
GCCATGGAATGGAGTAAAGAAAAGGtgatttgtttatattttttatgttt
gttcGTTTTACcaacaaaaattatgaaaagttATTTGTAGTCACCCTCAA
AATGTTttaattctaaaatattttgaaggaaTAGGACCGAAACTAACAAa
gtttataaattatttttcgaaCTGCCGGCCATAAATGATTTTGTAAAGTG
TTTGTGAGTACTTTTAGATTGTCGTTTAAACGAAATAAAGGATTTTATCA
TCGTCGTGTCAAGGTCTTAAGTATTGTAATGGGATGAGTGAGAAAAGCGA
ATAAAAACGTTGCTCCTTTTTCTTGATACCATCTAGCTTTATAATTTCAG
TCTAAATATTAGtctttgaaaatagaaaatttgtgtTATTTATGTGGGTT
ATATATATAACATTCTTTGAtatctttctttattttactGTTAGAGTTCC
CCCTGTCTGTTGTGCatatcttttgattgtttttaattttcttggACATT
CATTTTTTATAGTAATTTACACTCTTGATATAGAATGTGGGTCTGATGGT
CTGTTGATTAAAATTTCCATCCCTTTTTTTCTGAGTATCTTATTCTTTAT
AATTTCTcattatttctcttttttcaatttgttttcttttgttgttcTCT
TCATTCATATTTTTGTTCAGAACCTTGTATTAAAATCTTTCTTGGACTCA
AAtctccattttttcaaaacaaattgaaTTCAATCTTGTacagaattttt
aaattttgataggttCGTTCTTTTAGTTGTATCCTTTAGGGAAGATTCAT
TTCTGAGATAATCTACTTCAAGACAGAGGTATACATTAAAAGTTGAAGTT
TTAAAAGCTTTAAAGGCCATAATCCCTGAGGACTTCTGTCTTCTGTTTAC
TGATATTTCAAATGATTTTGGTATGgtatttttggtaattttttgttTGA
TATTGTTCGAATAGTTGAAaacattttgcttgtttagtGGGTAAGTTTTA
AACAAAGCCTTTTAAACTTTCTGTGAGCACTTACTGTAAATTTCTAGTGT
TAAGGGGAGACACTCGTCGTTGttatcattgaaaaaaaattggaaggaaG
ATAAAGGTCTTAGCTATTACTGCTGCCTTCTGACAAGTTTCTACCTCTAA
ATTTTCCTGCAAAATAGTCCctgatcaaaatttaaaatgaaagttcAAAA
TGAGTAAATATGAGAtggtttttttaaattgtcaataTAATAACGCTTTT
ACATTGTCGTAAGCCGTGTGTAAATACGGGCTTAGCTATCTGGGCTAGTT
TCTTTTATCCTTAAACATAGAgtaaaaaattggggaaaatttttctacac
TAACATTCTACTTTCAATTTATATTTATAGTacaatctttttttcaaagt
aGCGTTATCTATATTTATCAAGAAAACCTTACACTAATGTgtagattttt
ttatgaatgaaCATATTTAAGGAAACTttcttttgctgaaaaaaatGACA
CATGGCTTGTGGTTGTTAAAACTCCATCCTAAGTTCCTTTTTTACGAATC
CTCGTATGAATtggaatgtttttattttctgattTATCATTAGCTTTTAT
TTCTTGGAagataccttaagtggataaattttggcgtggatttaattcgg
cgattggccaaaatacgatttttggcggggatttaatttggcgatagatc
aatttcataaaatttggcgAGGATCTAATTTGGCGAagtggaaattttgt
cacactgaaatgggtgaaaattactcaaaaatatactaaaaagttgtgat
tttcacataattctctttttgtcaaatttggcggggatttaaattggcga
attgccgaatttggaaattttggcgaggatttttaatttggcgaattttg
gccaaattcgccaaattcgccaaatttaatccccgccaaaatttatccac
ttaagacaaaaattttgattgggaCATGGAATCACATCGATTTCTCCTTG
AGGCAAAGCATTAGTGAAAAACatgtttatttttatcattttctacAAAA
TTTTGGCATAAAGTATAAGAACCTGGATCTAGCAAAGAAGTTTTGAACAA
CTACCTAGAAGATAGTAACTTATCTTCGTTTTTTATTTATCccctttttt
caatatttgaaaaGTTACCTTACTTTTAagattttggttatttttcgAGT
TGAATTTTATTTCCAATTAGGTATAAAGTTTTATCATACCGTGAACTTAC
TTGACCATGAAAATTAAGAGAATCTGAGAATGCCTATGTGTACGTCTGTG
AGTCCAATATACTTTTCAGGGAAGCCAGGAAACaagatttggctaaaatt
tagCAAGCCTGTTCCTTGAGTGAATATCTtgaggtgttttttttcattat
ttgaaaattttgatttttggtgccATGGATTTAGCCTGGAGACTTTAACG
AAGGTGGAATTTGGCTGGAATTTGGCACTCTTATTTTTAAGggaatactc
tcgggtactttatagccggggggattggaataaacGGGgaaggggggttg
gaaaaaatctctaaacttaataagcgggggggggctggaataaaaatgtc
ctgggtggaaaatttttgaaaaggaggctaatacagcataATTGGGACAA
AAAacggaactttcaaaaatattttcccaaaaattaattagcgggggggg
ggctattaggtacccgagagtatgtgtgtgttttcacattttttacaaaa
gaaaacatCAAGAATCTTTTGCTATAATTGATTTGCATGATTTAGATATT
GAAGTTTAGCTAAGTTCGGTTAAGCACGTTCGACAGTACAATGAACTGGA
CCCTAAAATTGAGGATAttgtaaaattcaaaatgttcaaatttttaGGAC
AGACTCTATTAACACATTCTTATTGTTTTTAGGAGACAAAATATAATGGA
ACCTAATGAATACAAACTACATTTCTTAAACATTGAAGTCTTCAAAGATC
CTAAACGAGAATTAGCTTTGATATTCACTATACAGTATGCATTAGAGGCA
TTCAATCGGATACGTGATCACGAATCTAGAGTCAATTACCATTGTTTATT
ATTCGGTAAAATCTCCGAGAAAGATAGAGTGTTCACAGAAGGATCATTAC
CGCTTTGTTTTTTGATCGGTGCAACGCAAGGTTTTGTCATTTTGTTCTCC
TTATATCTGTGGTATGAGATACGCAAGAATCGTTCAGTCTTTTGGTAAGA
ACCAACAATTTTGTTTTATAGAATGAAAGCATGTCCCCCGAAAAAGACAT
TTTGCTTCATTGATACTCAAAGAAAGACACACAATTTTGAGTATCAAGGA
ACCAAGTTGTCTTTTTTCGGACttgttttggtttttattttcccTGATAT
TATCAGCTGgttatttctttgttttatggtaCCTTTTGAACTAAATGTCG
CGATTTTTTGAGCTCGCCAAAGTTTATACGCCTAAAGTTAGTTATTTCAT
CGAAGGTTACAGCCTCTATAAGGTAGCTCGTTGGAGTCCAAAAGCGCCGT
ATTTTTGGGGAGCGTATAACTTTCACTTCTAAGCTACAAGATTTAGcaga
aatatttttctgaatcGAAAGCTGTTGCGAGTTGTTCAATAGTTTCGCAT
ATGTAGTTTGTGTACCTGAAAAGCATATACGATACTACTAGATTTTTTGT
CGATACTCAATTTTAagataattttcttttcaattttgtaCAGGGCGACA
ACAGTTCGGAAAAGGATATGCTGGGGAATCTTTTTAACATACATGGCTGC
ATTATATACATTAGCGCATCAAGGTCTACGTGCTGTTTGTAACTCACTGT
CTGCTCCAAGGTAATCTTTTAACCTCCATCAATATTTGTGAACAAAGTTT
CTTTAAATCTTCAACCTCATCCCTGTGGGCCATTTTTTAGATGTTTATGG
CGTGGATTTTCGTACTTTTCATCCCGAAAAACTTATCTCATCTATACATA
AAGTATGTTCAAATCGGGGAGACCGACCTTTTTTCGGATGGAGTGGCGGG
ATAgactttttcatgaattacgtaACGTTTAACCTCTGACTCGTCTTGAA
AcaattaccaaggtgattatgtcccttgagacaatCATTTTTAACTAAAA
AGAGTGCACCTCTGAGAAATATCGGTCGAGGATAAGTTGTCACAGCATTA
CTTCGAAAACTTGTGGCgcaatttatgaaaatgtcaaTTCGACTAAAAtc
tgaatttcgaaaataagGTCGACTGTCAGTGATAAATGAGGTTAATTTAG
TCTCGAAATAcgtaatttagaaaaattatcgGTTTGAATTTCGGAAAGAG
CGGAagaaagtctaattttctaattttttttttgacgaaatCTATTATTT
CGAAGAAGATTTCAATGACGGACAGAAATGATATAGTTTTTAACAAGTga
cattttccttttttagcTGTCGTGACGGTGTTGTGTTATATATCGACTTC
AAAGTGTTCAAACCAAAATACCTGAATGCATGGTCTTTCTTCTCTCTATG
GAACACCATACTggtaatttattcaaaattttatttttttcttcgtttgg
ggataccttaagggaactaattttcgcggtgcGAGGGTACTAATTTGGCg
catttttcaattaatttcgcggatgactcAAATTTTTAGTCCGCATAAGT
GTTCCTGTCGCATACCAGACAAATATTTCATACCAGGACAGTATCTGCCA
actgttatattatgctgatataagcaaaaaatgtttttcttttccgcttt
ctgaccaatcttgctccacatccgttaaaaagaagaattatgggcctaaa
aaaacttttatttcttAGATATTTTCCTgcaaactgaaaataaaaatgat
gaaatctttGTTCACAAGGAAATCTTTGTTCAAAATATACTATTTTTTAT
TGTGTctaaattttttatataagtAATTCTTCATTTATCTTACCCtttgg
aaaaaactttgacaaattatttttgaacctaccttgttaatttttattat
tttaactaTTTTCAGGAAAGtgcacaaaaaagttttatatcgCTCGCCAT
CTTTGCCTTTCTTAACATTTCAAAGACACCACTGGAAGAACGGCTACAGA
TGGTATTTGAATCTTCTTCTAATTTCTTGATTAATTGTTTCTGTTCCAAT
AGTACCAAcacaaaaatttccaatttaGAATGTTACATTTAGGATAGGCG
AATTTAATGAATTTGATcttgtttttcgaaaaatgacaaaatattttatc
ctttgtagttcaaaaattgttttaaaatttatgactatttttttagatat
tctATGTTAAATAAGTTTTCAAGGGATAGTCAGATTTTGTTATTTGGTCA
attcaaaacttgaaaatattcaaaaatatttcaaattttcaaaatttcct
aaaaaacaATAGGTACTAGACCTTCTTTTACCGAAGGTACTTTTAAAACA
CTATCTGGTTATCCCTTGAAtaatcaatttttaattttttgttccaGTCA
GTTACTGTATGTCTGTTAAGTGTATTTGGAAAAATAACAGCCGTACTAAA
ACAGAATAGGAACATGTTTACCAACCAAAATGCCACGGGAATAAATACCT
TAATTTGATTTTGCGGTTATGGATATTTTATATATCACACATTTGGGGAA
TGAGTACAATAACGGAATTAGAAAAAGGTGAACCGGGTGAACCCAGTGAC
GTAATTCGTGGCCAGGCAAGCCCGAAGTGGGGATCGCAGATCTTGGTTAA
ACCATTTCATTGATTATGCTGGAAGGTGACAAAGGGAGAAGCAAACctaa
ttgaaaaatcaaaacattttcagAGATTGGGGATGTTAGTTACTTTCAGA
AACACATGCATTCCCTATGTCCCCTTACTCGGAAATTACATTGGTGGGAA
TAGAACGTAATTAGATATTCGACTTAGAAGCCAAAATTCGAGCATTATCC
CAAAGATCGAAATAAGTGTCAAAAGGAAAGGGATGGTCGAAGGATTTCAA
ATTTTACTGGGTCgagaaaaacaaatcaaaatgaaaaataagtcggCAAG
GATCATTCTCTTTTTCATGGAAcaagataataaaaaaataaacgaaacat
agtcaatcaaaaatgaaacgAATGCTGAAAGCTCGAAACTTTATACCCGA
CGGTAATCAATCAAATCACAAAAGCTGGGCAAGGCAGTATGAGTTACAAC
AtaattcaaacaataaaactTACAGATCTTACCTTTTCACCATAGGCGAT
TTTAGACAGCAAGACAGGAGccaattcaaaatcaaaataaaccagccgag
gctggaaggtcagccaatagagcttagctagatagctttaataagtgggt
taacagatgtaagagatgcactGAANTCCTCTTCACTGTGTgggtactat
atggatggcccctccagtctgggtaaataaattttgtagtttagtaccgt
caagttacacaacatgcacacaaccatcttgcagactttgctggtcgcaa
atgataatcgaaagcaaaacttaaaattcataactatgcggggaagctca
tttttcccccgttttgctttaaactcgcttttgattggtctatgaatttg
ggcgaatGATTTACCGCCTttgcggaataaacacacaaccataataaata
aattcaacggggcagcggtgtagcaattaatttcaactggagGTCCtatc
ttctgtgccaagcactggcagtgttttttaaactttaaaacaatgttaaa
tgaagaccagattgatctgtttgttatggctgtgcaagttgtgacgagag
tgtgcatgttgtgtaacttgacggcagcccgctttctgcaagtctgataa
gagatatctataaactgttatcgccattcattccattccatcattctgTC
AAAATGTGCGCCAAGCTTAGAAAAggtcagaaaaacacaatctgcgtccg
gaactgcgtgaaaaatagtctgatcaatttcaacaagaactgtatatatt
aatattaatataaatgatcaaattccaaagNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacccaaaaagt
taacccgatcggaagaaagtttagaaatcaaagtgagatcggaaaaccgg
attttttttttgccgtcttatgatgatgatggaggaactggaagaaaatt
ttacctatttgaatgctcagcttaggctgaccaattattttcatttcact
TTTACTTGCGCTATCTACCTTCCATACAAAACTTGCTCCATCTATTTTGA
TGAAGATCTACtaattcaaaatatcattatAAATTCAACTTCCACAAGAA
ACAACATAAAAAAATAGTGCCACATCTTTATCGATTTATTGAGCTTCTTC
GTTGTGTCGTCTTTGTTCCTCTTCTCCCTCTTTCTTCCATCAAGGTCAAT
TCGAAatggaaacaattttttgacAGTGTAATGTACCCTGACCGTCAAAG
CTAGGTTCACTGGGTTCACCTTGATTCAACCGGTTCACCAGATGGGTTCA
CTCGGTTCACCTGTTTTCTAATTACGGTACAATAATtcaaatttggcgga
tggcgggaACTTCCCCCCAAAACTTTCCTTAAGGTATTGACTTGACTGAA
GACTTGTTGAAGTTGATGTTTTCCGATTTTCCAAATCAAACctagcaaaa
attttatcactCCCTTCCTCTAGATGACGCGGAAAGTGAGAGAATATTTA
TGACAAGATTCCTGTCTATCTGTCACCTGCTGTCACAACAAACAATAGAA
AGCCACAACAATAGAAAGTTGACTGAATGTGAACACAACCAACTAtaatt
gaaacttttgaaagcgGTATGGCAGAAATATTATTTAttctttcatttaa
ttttttaataattcGACTAAGCAACCTATGAGGGATGAGAATTTTACGGg
aaaaatgttctcaattttTCGGAAACATCGATATTTAACCACAATTTTGA
ATGTTAACTATTGTTCCTTTTTTCCTACAGCGAAGGGGTTTTTATTATAT
CTCAAGAATGTAAGGTTCTTACTGGGAAAACTTCATTAAGTATTTCGCGA
CATTCGTGAAAAAtagaattaaaatatatt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067663TCONS_00067663Clytia hemisphaericatranscript
TCONS_00067664TCONS_00067664Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067663-proteinTCONS_00067663-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:334681..344010 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.18	29.33	13.66	10.54	8.89	7.87	9.14	9.02	4.51	6.4	7.18	4.31	8.42	7.56	8.01	8.48	4.8	5.76	8.28	6.51	5.56	7.14	19.96	17.96	40.75	38.81	6.54	5.48	13.51	12.36