XLOC_042250 (gene) - C. hemisphaerica

Overview
NameXLOC_042250
Unique NameXLOC_042250
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_472:354878..361033+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042250 ID=XLOC_042250|Name=XLOC_042250|organism=Clytia hemisphaerica|type=gene|length=6156bp|location=Sequence derived from alignment at scaffold_472:354878..361033+ (Clytia hemisphaerica)
GGGACAAAAAAGTCCCTTGTAAAATTTTACACAGATAATCGAAACGAAAA
TTTCACAACAAAAAACACAACGGTAGAGAGTTTTCCTCAATCAATCATTT
ATAACAAGTGAGCTGAGAGTAGGAGATAAACGAtgttttaaattaaaaag
acgACCTGTTCAGATTACAAGCTATTAGCACTGAAAGAGGATTTGGAAGG
TAGAACTAGAGGAATAGTTTTTTACAAGGAGAGAGAGTAAACATGGCGAA
AGATATACGTGTTCATATCGAATATTGGTAAGTTCTTACAGTACTTTCGA
TTTAGACAACTTCTCTAAAAAGGGCATAATATGTTTCATTCGTCTTTCAA
CGGCACCCAACTTCAGAATTTCTGCTTTCCCTTCATAGAAAGAAATAATT
GCTGTGATTTTCCAAAAGATCCAAAAGCCAAGAAAAGTATAAGGGAATTA
GTTTGCCCAGCGCATACTAGGTTTTATATAAATTGATGGTATGCTATTGG
GACAAAATTTAGCTCTTAGAAAAGTTGATAATGAAAACACAAAAAGGAAA
CGTgcttttattctttttcagtGGCGGATGAGGTTACGGTAGCCGATTTT
ACGAACTCTCCAAGATGATTGGACGAGAGGGTATTCCATCGGAAAATATA
ACTGGAAGAACTGGTAGATCAAGTAAGTATAAactaaaatcaaaatgtta
aaaaaattattctctCCCCTTGTAAAAAACTATTCCTCTAGTTTTTTCCT
GAGTGTTAAAAATTATCGACGCTCCATAAACCGACTTCCCCCTCTCCCTG
GTAAGGAAGCACAACTTCGTTCTTTAAGTTAAAACTTCTTGGAAAATACT
TTTCTCCgtactttttttgataaaactcGATATTATTTTTACAGTAGACT
TTCCATCTACCTTGTTAACTCGCAGGGGACTTGGAGTAGAAAGAATTCCA
GATAATTATAAAAGAATTTAGCAACCAAAAATGGGACCAGGGTCTCTGTT
CGGCATTAAAATCGTGAACCTGCATGTGGATGTATGtggagaaaatacaa
aaaatgcaAAAGCTAGTTAGCAGGTTAGGCTCatattgaatttcaatcaa
attttgaaatcaattcaTTTTAAATCTTACTTTTTTATAGCTTCCTTCGA
AGTGACAGTGAACGACAAACTCATTTATTCCAAACTGAAAACTGGAAGTT
TTCCTGATATGGAAGCGGTAAGAAAAAGTCTGTTTTTAAAAGTACAATAT
GAAACCTTGAATTGAGCCTTAACTGGTCAATTATCTATAACCCTTCTCCT
CGGTGAAAAATATACTGAAATGATTccgatattcttatttttcatcttct
tcttcaatgAGCACtgaattttccttttcattttgaaaaacttttttttc
tggaaacTTGTCTTTCTTTGGACAATTTTCCTAACCCACAGGAAGATTCT
ATATTTTCTAAATCTGCTTTTGTTTTTCTAGACTGTAGAAGAAATTCGTT
CTATTATGAATGGAAACAACCCTAAATCAGTGACAAAGAAAGAGCCTTGT
TGTTGTATTCTATAAGCAGAATGCTGAAAATGTTGTTATGAAGTTCAAAT
CTGTGCTGAGAAATATTTATGatgggtggtcagtaaaatacatATGTTGG
CCATCTTGATTTACTTCAAAGATTgtattttttagacaaatttgtaGCTT
TATACACTTTTCTTCTTCTAATAGTTTAAGGTACCAAGCAAGCACTGCAT
GTAGAAATATTATAATCGTGTGCCCAAATAAAAGATAACTGAGGgatctt
tttaatttcaaagaccataaataaaagttaaagaagCCAAAAACTATTTT
TAGTCAACTTGCaagttatttttataagaacattcaaattttttgaagcc
ttcggatgttcttaattttttgagttttaagcttataaatgttcttaaca
ttttcttatttacgcctttttctaagaaattgggtgttttagagtccacg
aagccttaaaattttcttaacttgttctaacattttggctatcgaagcct
tgtgttcttatatagtttgttcttataaaaaaacgtgtataaatcTTCTC
TAGATACATAGTATAACATTACGTTATGATAGAGAATTGTAAATATATGA
ATTTTTAATAGTAACACACCACATTCAATCAAAGAAAAAGCTGAATAAAC
CATATACATTTTGCATTCAATGCTTGGATTTGATTCGTAGattttgttat
gttttaatACTAAATGAAAcataaatttattcaaaacatAACTGTCTCAC
AAAAAAATATAGTACAAGCGTTGGGGTTTAGTAGAAATTTATCCAATTTT
CTAAAGGgagtatttttagacgtttgaAGAAGTAGAAAAGCCACATCGAA
AAGAATGTCAAAAGATATATGTGTTGATATCGAATACTGGTAAGACGATC
AATCCCTATGAATTTCCCTAATCTTTTACATAACTCTTAGGCGGCACACA
TCCCCAGAATcgattttgatataggggatgatGCGCATCATGTATAAAAT
TCTTGTCCTAGAGTCACCCCAATTTTGAggtaacctgtttcaattttctt
aaaaagcttCCGAAGTCCAATGGTTGTATTAACctctagccattcaaatt
tataattaagatttaatgaaatttaaagatctctcatataaaacttacta
cagtatatggcccccaataTGTAGGTTTTAATTCAAATGAGGATTCTGAT
CTGTAGATTAGtcaaaatgaaatgatttttgattattttggtaGGTTAGT
ATTTCTTCTTtaagaaaaacatgttttgGTGGTCTAAAACATATTTGGAG
TAGCTAATTTACttctaaatgaaaaaatgttgcaTCAAAATCTGCCAAAA
CTGCATATAACTCTTTGTAGCTCTTTAGATACTGAAATTAAGTTATGAAG
ATGGAGTATAGGATGctttctacacctaataccTATCCAAAAATCCAGAT
GTTTTTAAATCTTGAGAAGTTAAATGAAAGATATGACATCTTTAAGTCAA
CCAACATTTCGGGGGCCCTTGAATTAGCATAAATAGAATTGAAAATTCTA
AAGATGGGTAATAGCTAAAACCTGTGGAATTCTTTTGCTACCAACTTAAC
TTCATAGTTTGCAACAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA
TCGTTTCCGTGGAAAATATAagagaaaaataactttaaagccTCATATCT
TTGGATTGAGCCAAGTTTTAATTCTGAATTTTTTACAGCGTAATCCATAC
CCAAACAGGattatttccaaaagaaaatggttttcaaaaattcaatcaaa
acgtcatttcatttaaacagtcattttcaaaatttcaaaattttcgattt
gGACTTTGCATTATCGAAAATCCAGAAATCCCTTATCGAAATTACCAAAT
TTTACATCAGTTAGTTGGAAAATTTATAGGAGAACAAGCACATACCAATG
GTTTTTCACTCTAACATCACTGGACGATACAGTTTGATTTTAGGTAGACC
TACATTTTGGGGGCCACAAACCTACATTTTAACGACCAAGGGATACTGTG
AACATTTTGTCTAGCAAATTTATACTCATCATCTTTCAAATTATACTTCC
AGACTATGGTCAAAAATTTATACTTGTACCTCAAATATCTggagaaattg
caaaaattccTGATCTACATTTTGGGGGCCATAGCTCTTCAAGCGACAGA
AAAATATTGTTCAAGTTGAAACTTTGGGAAAAGAACTTTTGGGAAAAACA
GTAGAGATGCTGAAGttttaaaatcagaaaaagttttgtaaaatatcttt
tcctGCGGATTTGAGAGAGCTTTCAAATTCAACCTACAtattgggggcca
tatactgtaatcaagctaatcaagtttctaaaactcaaaaacacaaaaaa
aggaGGAACCCCCGGTTGGACCCCCGCcatactggaaaatttggccgaaa
tttcgtccccggtggaaagaATACTTAACAATTTTAGCCCCACTTAGAAG
ATGGccctatttgaaattcaatgtaaaaaattgcactccaaaactatctc
aaatggattttttgaaatttctaataTCTAAAATTTAATAATGTTTCTTC
Cccgctgtgggaaaaagttctacctgggcactgagacaggggtgtttctt
GCGCTAACGTAGATATATTCACATAAAATTAATTAAATCTTAATACCCAA
acaactctctctaatttttctaaaagttcAATAGACTTCAGACGCCAACA
GACGTCCGAAAATTTTGACTGCTATTTTTGTCGTACTCGTTAATTCAAAA
CTTCTTATTCGCCTTTTGATCTTTGCCGTCTTCTACATCTCATCAGTCTT
TCATATAGTAATTCTAATAATTGAAAGAACAAGGTCTTCTatgatatttc
caaaattttagccGTGGATGAGGTTACGGTAGCCGATTTTACGAACTCTC
CAAGATGATTGGACGAGAAGGTATTCCATCGGAAAATATCACTGGAAGAA
CTGGACGAACGAGTATGTatacaatcaaaattttttttactgatCACTGT
TGCACTATCTAATCTTTTATCTTGAAATTAGGTCATCAAGAAATCAGCCC
AACTTGATAATTCGAAAACGAATTCAACCtgttaagggctacatacacta
cacaatataatGTCAGGCAACATATTGATAGAATATTgcttaatgtcaga
aatatattgtcagcccgatttgcaatattccaacaatataggggaattgt
ttacaagtaggtaatttttttttataatagagcaccTGCTGTTTACTctg
tacattacggtccgaaatCTATATTGTAGAATATTGctcaccaatatatt
gtgtagtctaagtagccctttagCCTTGTTTGAAAATGACTACCGTGTTG
TTAGTTTATAGAGATGTGGTAAATGGAATCAGTGGTATGGACTTAACAGT
TTATTTTATAATCTCTCCAGGTTCATTTGAAGTAAAAATCAACGATAAAG
tcattttctcaaaacttgACACAGGAAGTTTCCCTGATATGCATGCTGTA
AGTATTGTGaacaattttgaaacttttcatttcTCATTCATTACCTCGCA
CTCAATAAATTATCGAAAGACTGATATAATATCCGGCTCCTGATCATACT
CAAACGAAAAGAAGTTTCTGAAAAGAAGTGAAGAGTTTGAGTGAAGTTTT
AGGAAGATGGTGCTATGCAATGTGCTTCATCCCATCAACCCCAAAACTTT
ATTTGTGTCGCCATATATTATGGTAGCTTTTTACATCTTCGTATCCCAAA
GCAGTCTAAATGGacttaaaaaaacaatgaaaaagcaCAAAGGACAACAA
TAAGCACGAATGacaaaaacaaacatgaaaAACTCCTCCGcgtatcaaaa
tataaaaacatgaaTAGCAaggttaagcacgggtttattttgaccgtaaa
gtgcgataccgtaggcctgtacataagatttcacttgcgTGGTTTGCTTT
Gacaagttatgtacaggcctacggtatcgcactttacggtcaaaataaag
ccgtgcttaacctcgctaatatcTTATAACGGAATCTCCAAAACTTCATA
ATATGTAAGGAGAACGAAGATCTCATTCATATTTATGTTCACTTTGCAGG
TCATCAAAGAAATTCGTTCGGTgatgaatggaaacgaggctcaTCGCATC
ACGGAAGAAGAGGCGTCTTGCGTTCTATTNCGTTCGGTgatgaatggaaa
cgaggctcaTCGCATCACGGAAGAAGAGGCGTCTTGTGTTCTATTGTGAA
CCCTCTATCGAAAGTTTATTATTCTTGAAAACTCAATATACGTATGAAGG
ACAAGTCAGCAAAATACACGATGCTGTCTGTTTGGATGCTATTTAAAACT
AGCTGTATTTTATGAATTGAAGAAGTAACATGTGTGTGTTGTGAATACAA
AATATA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067665TCONS_00067665Clytia hemisphaericatranscript
TCONS_00067666TCONS_00067666Clytia hemisphaericatranscript
TCONS_00067667TCONS_00067667Clytia hemisphaericatranscript
TCONS_00067668TCONS_00067668Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:354878..361033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13	0.45	0.45	0.48	5.84	3.79	18.04	20.93	61.26	36.94	36.78	40.54	123.33	109.44	74.78	67.49	36.05	57.98	102.45	160.45	66.51	62.68	26.44	37.52	32.4	37.85	144.85	75.9	12.53	8.27