XLOC_042253 (gene) - C. hemisphaerica

Overview
NameXLOC_042253
Unique NameXLOC_042253
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_472:414888..421281+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042253 ID=XLOC_042253|Name=XLOC_042253|organism=Clytia hemisphaerica|type=gene|length=6394bp|location=Sequence derived from alignment at scaffold_472:414888..421281+ (Clytia hemisphaerica)
NCTTTGTCTTTATCATCAGTATGTGTTCTGGAAAATGTGGAAAGCAAGAG CCAAAGGGTAAGAATTATACAAAACCGAAATTTATGCTATCTTCTTTAAT CTTCAAACGAAGAGAAAACCGGCAAAAGAAAGGCATAAATCTTTTTCTTG ATGCAGTACTCTCTAACTCAATTCATTCTGTTCAAAATGAAGCCAAACTT TATAAACAGAAAAGACGTCAGGTTATAACAGAGCGCTCTATTAaagagaa aaactttgaaaacgaaAAAGCAAATGAAGAAGAAATCGAAAGGATTTGTG GCATTGATAGTTTCTTTAATGAACTTCAGAGTGTGAGATTGGATAAAAAA AACTACAGTGGTGAAAATAATCTCTCAACAGAAACTTATATACATGACAC TGATTGTGAAATTAATAACATGGTTTCCAACTTCATCGAAAATGGTTCTC TAGGCTGAAGTATAGGTGTAGCTTCATTAATCTTGTGAAGAGGGAGAATT GTTCTCTCATTTTCACCATTAACATCATAAAACAGTAGTTTCAATCTTGC TGCTTACATCTTTTCACTAAATTGTTGGTGTACTATCAATTTAACTGATA ACAAGGACGTGGAGAAATTAAATCCTACCAGACATAGGAATATAGGAGAG AATTAAAAATTGGTGTCCAAGTGATCTCTGGTTTTtgcattttgtttgtt ttggacaGTTCAAAAAGTTATTCCAGACGAATCAAAAGTCTTCTCAATTT TAGAATTGACAAGTTACAAGTTGAATGAATTCATATTTCTGGTGTTGGAT CACCAGATTATTtgcttaatttttatttttgttactaTATTGCCACATAC CATTGATTGGTACTGTTACTATGCTTGAGGTAACTTACATTATGTCTTCT ACGGTACATCAAACTCATCTAGTCTGTAAGTTTTAGAATGAACAAGTAAT GTTGTTACCTTAatagggaactaattttgataAGATTTAGTTCTCAccaa aataaaagttgattttccaaaataactCCTTAGTTAGTCTACGACTGAAT TTGTACAATGGAGTGTTTATCTAACCTTCTCAGTACCATGGCTTTGTGGT CCAGTGGTGTGTAAAACTAACCTTTTATTAAACTGCTCAATTTCAGGCAA AATCAAATTTACCCTGCCGTTTACTAATTTCAGCAGATTTTGCTGAATTA GCATCATAAGTTTTatgattcaaaaaacattttgaccaatatttttcagc ataagcTTTTTGTTTAgttaaaaaacatcatcagtgcATATACAAGTAAA acgtacaaaaattttctgaaaagccCTTTTCTTCGTCTAAATCATTTTAT CGCAGAAATGAATGCCAAAATTATAACTTCCCCTCATCACATAATTATTA TCaatacatttgatattttgaagGTTTTCGCTTTTCACAGAAATAAGCTT CTTTTAAGGTATCCGCGTGATGTACTTCAAAAGTGACTTTTAAAATCAAG GGCCAAGGAATGGTTTGATTTGAAGACTATGAAAGTGAACCTCAATTAAT GAAATAAGCATTATAAATAACACCAATCAAGGAAAGGTATCTTGTTGGCT TTTTTAATAGGTCGGTCATTGTATTGTTTCTAGTATTTATGAATTGACTC AAGATTCTTATTCAAActtaaatgttattttctcttgATTAGTTCAACTA ATTTTGGTCAGAAGCCAAAGAACGTCAAATGAAGTTGTCAACATCAAGTC TGGTTTGTTACCGTTATGATGtaataattattttaattttaatcattttt cggacgattttacaaaaactttttttcctaatcAATCTCTAAAGTTTACT TGTTCATCTATTCTTAACCAATTCATTTCTTTTGAATGTTAGTGCTATTT GCATTCACAACATCTTGATCGACATGATTCCAACCGCCTTAATAACAATC CAAATGGTTTAATTACCTACCAACAAACAGGTTTGTATGAATATAATAAT TCTTTGTTCACTTAGGAACCTTAGCAtggtatacatgttttttttataag caagtgtctgcccctatatcagactcgcattatgcttagcattatattgt tctcaaacaatagagccattgtttaggtacctaAAACTGAGCCTGTATAT GCTTGTagacgttatgcttataaaagaaaaaaacatgtagcatTGCTGCA AAGTGCATAATTGATCATTAAAGtcctaaataattttttatccCAACATC AGtttcttttcaaattgaattccaaaaaatgtcaaaagacaacttttaac atgttTACTGCCATTAAAGAAGCCCTAATGATGTAAACACAATCTCACAG TAGAGAGAAAATCGTCCACAAAATTAAGTAGTCTCGTTAAATCTTGGATG AGCTCAATTGCAAAATTTAACCCCGCAAAAATTTATCACTAAAGAGTACT ACATACCCAaatcaataaatattttaataagaGGTTTATGTTTCTTACAA AAGGGTTTAGAAAAATGCTATTTACACCAAAACAATGCTATTTATGTTAG ATTTTAGGATATTTTTTGTGCTAattaaaattgaataactttatGAAGTG ATTCATTAAATGAGTTATTAATATTTGAATAGTGTCAAGAAAGATTATTA AGTTTTATGTAAAGAttatttataaatttcatttttttccatttacaGCC AATGGCATCATCAAGACTGGATGTGTAAACCAGGAAAGATTTCTTTCTGT GTTTTATATTCCAACCTTTTAGTCTGGGGAAATCATTTTGATGCTTGTTA AGTTTGCTCAGGCTTTTTCTATTTTGCCTTCTTATAGCAAGCCTGCATTA CCTCCTTGCCCTAGGAATGGGAATTGTTGCTCCATAGCAAATTGATTCCT ATCACCATGAAATACAATCATGCCTACAATTTAAATGTGTTAAATTTGAT AATATTGGAAATCGATTTGTTATAAATGCCATAATTCGTGCTGAAAAGTG GACACAATTGGGACATACTGTACATTTATTCAAGAAATCAATCAATTTCT TCTTTGCTGGTTAATTTCTTAGTAAAATGCCAATGGTAGGACATTTTAGA ATATTCATATTAAAGTATTCTCGTCATGCTTCTATCTATTCTTGATTAGA AAACGATACAAATTTTATGATGCTGGGTTATTAAAGTGTACAATCGAATA TATTTGCCAAGTATCTCTAATAGAGCTGCTTTATGTAGACAAGTCTCAAA GAGGTTATCAAAGTGGCCGATGTAACAAAGCTGTGAAAACCATTATTATG TATGCTCAACATCCTCCAGTTGCTTTGTTGATCTTCAAAATTCTGATTGA AGACACCTTGgatctaaaaattttggatagGTTTGATATCTTCCCATCCA GTGTTTCATTAGGAGTTAGCAGAAGGTTATAAATGATTATTGAAGCTCAA ACAAAGAAATTCAATGCAGAACTGAGCTTTTATCACACATTTGGCTGGTT ACaataaaattgcaaattttataGAATGAAATAATGGATTGGTCAATGAG TTATGGAAGCAAATAACCAGGTTTTCTACTAAATTGATATTTCTTAacgt tttttaaataatgtGTTGTGCTCAAATTCGAAAGATTTTAGTTTCTTTTT AGGAAGAAAATGATATTGAATAAACCAGTCTTGAAATTTTTCTACTGTTA GTATCTTGACTCTTATTTCATTATACTGTCAAAAGGGATTGAATCCATGC CAATTTTTGTGTCCTTAATTTCAGTTATCAACCATTGTGATCAATGCATT CTCCATGAAATATTCACCAATGCAGTTcaagtttttatttgttttcaatt atgTTTGAAATAAGATGGTTCTTATGTTTTGGATTAAGATGGTTGATATA TGGACAAGACTTATTCATGAAAAGTCGCCATTTTGGTACTAAggaattgg aaaatttgaagTAACTTCAACAGGCACCAACATTCAGTGATATTTTTACC GCTggtcatcaaaaatttctcttccTCTACTTCTATCGACCACACCTTCC TCAGAGCCTGGTCTGTTTGTAATGTATCAAAAAATTTAGTGGTGTCAAAT GCGCTGATGATTTTAAATGCCTTAAGAAGGATATCCCTATCGCAATGTCT AAGAAGCATACCTTTCGTCAAGTGCTCTTCGTGTTTTTGGGGTCGAAATC TTGCTAACAGACTTTTCAATAGGACAAACAAGTTTAATCACCCAAAGTTG ATCAGCACGATTGAGCAATTAAAAAGAAGAGTGTAAGAAAGAAAAACTCC ATTTGTGATCGTTGCACAGCAAAAGAAAGTTACGtgagaaaaagtttctt taattttcaaatttgttttctaCTTTTGAtcagattcttgttgtaaaatc gaaatttaacaTTGTGCGAGTAAAAGCTTGTGACTGTCCGTTAAAACACA TAAGAGTAGGCTGTATTCCATGTCTTGCTTCTAGTCTGTTTCTTAGCCAG CAAAccgtcatcaaattttatgatcCAGAGCCAAAAGCTATCAACCATTC GTTTGCAAAACATCCCTCATGAAAAAGAACGCGTAAAGATTCAAACCATT CAAAGAGAGAGGTGACCCATTTGACTTTAAACATTTAGGAGGACCTCCTA AAGCATTTTGTTGAATTAGCAAGGCACAGATAATCAATACCTGAAAAGAA ACCAATCACTATTTCTATCGCTGCCAGTATGTTGACGAAATCAGTCCTAG AATAGTTAGAAAAGCTGAACAAAATCCTTGAACAAAGTCGATCATTTGTG GCCTTTTGTGGTGTTTGCTTTCCATCCAGTGTATCATTAGGATCAAAAAA AGGAGTTCAAAGTCAATGCAAAGCTGCTATGAAGAATGTAACTTGCAGAG CTTACAGTTTACCACTCATTTGGTTGTCTTACAATGAGATTTCAAGTTCC GTAGAATGCAATGAGAGAGGTCAAGACCGTTCAAAAGCAAATTATCAGGT TTTACAATTATTTATTTCAACTTCTTGAGAAATACCtttcaacaactttt ttttttttctttttttttgacatcGAAAATTGGATCTTGAAGAATTTTGT TTACAAGAGAATATAGAAAGGGGTTTGGGGTGGGCTAACTGTATGCCATG TTTTGTTCTGTACTAAATTTCAGTAGTCATTTGGCTTGATCAATGAATCC ATCTGAAAAGTAACCGCTTTGGGACTTGGGAATTACGACTTAAGGGTGAA TCCAACCGACACCGTCACCTGGTGATAGTTTCTTCACNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCTTTTGGTGCTT TTGGGGTCGAATTCTTGCTAACAGACTTTTCAATAGGACAAACAAGTTTA ATCACCCAAAGTTGATCAGCAAGATTGAGCAATTAAAAAGAAGAGTGTAA GAAAGAAAAACTCCATTTGTGATCGTTGCACAGCAAAAGAAGGTTACGtg agaaaaagtttcttaattttcaaatttgttttctaCTTTTGAtcagattc ttgttgtaaaatcgaaatttaacaTTGTGCGATTAAGAAGCTTATGTCTG TCCGCTAAAACACATAAGAGTAGGCTGTATTCCATGTCTTGCTTCTAGTC TGTTTCTTAGCCAGCAAAccgtcatcaaattttatgatcCAGAGCCAAAA GCTATCAACCATTCGTTTGCAAAACATCCCTCATGAAAAAGAACGCGTAA TTAAAGATTCAAACCATTCAAAGAGAGAGGTGAACcatttgactttaaac atatAGGAGGACCTCCCAAAGCATTTTGTTGAATTAACAAGGCACAGATT ATCAATACCTGAAAATAAACCAATCACTATTTCTATCGCTGCCAGTATGT TGACGAAATCAGTCCTAGAATAGTTAGAAAAGCTGAACAAAATCCTCAAA GTCGATCATTTGTGGCCTTTTGTGGTGTTTACTTTCCATCCAGTGTATCA TTAGGATTAAAAAAAGGAGTTCAAAGTCAATGCAAAGCTGCTATGAAGAA TGTAACTTGCAGAGCTGACAGTTTACCACTCATTTGGTTGTCTTACAATG AGATTTCAAGTTCCGTAGAATGCAATGAGAGGGGTCAAGACCGTTCAAAA GCAAATTATCAGGTTTTACAATTATTTATTTCAACTTCTTGGGAAATACC TTTcaacaacttttttctttctttttttttgacatcGAAAATTGGATCTT GAAGAATTTTGTTTACGAGAGAATATAGAAAGGGGTTTGGGGNN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067671TCONS_00067671Clytia hemisphaericatranscript
TCONS_00067672TCONS_00067672Clytia hemisphaericatranscript
TCONS_00067673TCONS_00067673Clytia hemisphaericatranscript
TCONS_00067674TCONS_00067674Clytia hemisphaericatranscript
TCONS_00067675TCONS_00067675Clytia hemisphaericatranscript
TCONS_00067676TCONS_00067676Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:414888..421281 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.06 3.84 2.05 1.39 20.75 15.56 21.61 23.58 16.55 16.88 23.01 19.15 20.08 19.66 9.91 18.88 11.46 13.18 8.71 8.51 14.49 12.9 11.44 13.96 22.11 23.1 16.92 13.91 13.15 16.75