XLOC_042347 (gene) - C. hemisphaerica

Overview
NameXLOC_042347
Unique NameXLOC_042347
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_476:192184..196110+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042347 ID=XLOC_042347|Name=XLOC_042347|organism=Clytia hemisphaerica|type=gene|length=3927bp|location=Sequence derived from alignment at scaffold_476:192184..196110+ (Clytia hemisphaerica)
TATCGCTATCAGATTTCTtgagaatttcccttttttctgatAATATTAAA
ACCTAATTGATTGCAGTATTTTAAAAGGCCAATACAGTCGATGGAGAAGC
TGAAATGTGATTTACATCTTTTGAATGCTAGATAAGATGCGGTAACATGG
TTCATATACCTAGTGTcaccaaaaaatttcaattgttAAAGTAACTTTGA
AGGGAAGTCCTCCTCATTATTTTACATCAagagaaaaaaaggttttccaT
TGAATTACAGGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGC
AGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGA
AACGTGTTGCCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGT
CGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGA
CTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTC
AAATATAGTTTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAA
GAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTG
TGGATGATAACTGGATTTGTCTTCAAAGGTAAGAATCCAAAATTCGGGTG
TTTTACTATCAGTTTTCTCTTTATATAGAATGTGTAGCCTGGATGTGAAT
CTATTGTCCAACTGACTAGGATTTTCTTTAAGTTTATTCACTTCGAGGCC
AAGCAAAACCAAACATAATTTCTGAGTCCTGATTTTGCTCAGGGTCAGGG
GGTTTCAAATTATGAATACTAGACAACAtcataaaatgacgtcacagtaT
CTCtctaaatattaaaatatttgacgtcaattatttgtCGTTCAAAATAA
TCTCTCATTTTGAAATCGACTAGTGGTCTAGTCGATTGTCCTGTCAGTAG
AATAGTATTTAATAGTAATAATTTtgcaatttctttgaaaatggaATGGT
CTGATCAAGTTCAACGTTTTCAGTGCCATtcattgaataaaaattcattt
tcttccTCTGTTTGGATTCTATACGAAGATGCAGGAAGAAGATATTCAAG
AAGGTCAGCTTTTGGACATTGTGTTTTTATTGCTGACCAAGTCTTCAAAA
ACACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACACAACACGTGGA
TCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAaatttgggtttgt
ttctgatgAATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTACAGCTG
CATGCGGGGAAAGCATCGTTCCATCATTGCCATTACACGAAAGGCGATAC
AGTCAACCTTCTGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTCT
TTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTGC
AAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGCA
GCACCCATTGAGCCGCCCGCAGCACTTATCGCNTACAGTGGACTTTGGTT
CTTGAGAAGCATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATCC
AAATGTGAACACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTGA
TGTTACCATGAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCCG
ATGGTCCGACGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGAT
AATCGAGAGATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGACG
GAGACAACAACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAACC
CAATCTTTAATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGGT
AAGAATCCAAAATTCGGGTGTTTTACTATCAGTTTTCTCTTTATATAGAA
TGTGTAGCCTGGATGTGAATCTATTGTCCAACTGACTAGGATTTTCTTTA
AGTTTATTCACTTCGAGGCCAAGCAAAACCAAACATAATTTCTGAGTCCT
GATTTTGCTCAGGGTCAGGGGGTTTCAAATTATGAATACTAGACAACAtc
ataaaatgacgtcacagtaTCTCtctaaatattaaaatatttgacgtcaa
ttatttgtCGTTCAAAATAATCTCTCATTTTGAAATCGACTAGTGGTCTA
GTCGATTGTCCTGTCAGTAGAATAGTATTTAATAGTAATAATTTtgcaat
ttctttgaaaatggaATGGTCTGATCAAGTTCAACGTTTTCAGTGCCATt
cattgaataaaaattcattttcttcatctGTTTGGATTCTGTACGAAGAT
GCAGGAAGAAGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTCTTTAT
TGCTGACCAAGTCTTCAAAAATACTTCCAACCAACAACGTCATGTCTTTG
GAGGTGACACAACACGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAAC
AAGAACAAATTTGGGTTTATTTCTGATGAATCTTCCGTTTCCTTCAGGAA
CCGCTCATTGATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGC
CACTACACGAAAGGCGATACAGTCAACCTTCAGACGGAATTGATGAGTTG
ACTTCCGCCTTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCC
GCCCACAGCACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCACAG
CACCCATCGTGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATC
GCGCAATCCACAACACCAGTTGAAAATTCATTAACAGCTAATGAGATAAC
CACAGCATTCTCTTCAACTATAAGTGACCACACTACCACAATCACCACCG
GACACGCTTTACCCGACTTCGAATCCACCGACCTCATTGATGCTCTTGAA
CAGGAATCAGCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAACCTCT
AGTGGCGGGTGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTACTATC
AATTTCTTCAGCTCATGCTGACTGCTGTCAATCAGGTGAGACATCCATTA
CAACAGTTgaaatttcctttaaaagtccTCTGGATTCAACCTGGAAAACG
TGCAGCGTTTTTGACATTccgtgtttttttatatttagatACCGGCAGGT
GCTCAAAATTGAGGGAAACTCAATTATAAATCTTTTTCGACAAAATACTC
ccgaaaatatcttttttaaccCGATTCTTTTCCCATATTTTCTCTTGTAG
GGTATTGAATTTAATCTTGTTTAAAATGATTCATTTTTCAGCTGCAACAA
GAACTCTTGATGGAAGAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGC
CACACGGGCTCTTCGTGATCTTGCTGCGAACGAAAACCGCGCTCAACCCA
TTCGACACGCTCGACGAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAG
AATGATCCTAACGCCGCTAAACGGCGCCGAAGACTTTAAGTCTTTAAACA
AAATGCTTCGAAGATACCCTCACGCACTCACTCCACCTTTCAAACCAACA
ATCTATTTTCTTAACAAACCCAACGTACATCCATCGTCCACTTCCCAATG
CAATAATCCTCTTCTTGAGGCTAAATAATAAGTAACcggagaagaaagaa
gaaaatccaATTCCATACCGAACGAACGAAATTCCAGGAAAACACAACAG
TTGACTTCAATAAACTAACTTAAATCACGTGACTTCATCTCACCGATATG
GTCAGAGCAAAACCTTCCCATCGAAGCtaaaaatatatcatttataATAT
ATCAATCATTTCTATTAATTTGTTCAGTTTTTGCATGATAAGTTTGAACA
GTGAAATCCCTATTATCCTTCATCAGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067805TCONS_00067805Clytia hemisphaericatranscript
TCONS_00067806TCONS_00067806Clytia hemisphaericatranscript
TCONS_00067807TCONS_00067807Clytia hemisphaericatranscript
TCONS_00067808TCONS_00067808Clytia hemisphaericatranscript
TCONS_00067809TCONS_00067809Clytia hemisphaericatranscript
TCONS_00067810TCONS_00067810Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:192184..196110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.86	4.38	1.36	0.8	1.4	1.37	1.1	1.64	0.75	0.97	0.81	0.33	1.02	1.08	1.58	2.13	2.45	2.06	0.38	0.22	1.09	1.57	4.21	3.45	0.91	1.4	0.64	0.64	2.58	2.99