XLOC_042853 (gene) - C. hemisphaerica

Overview
NameXLOC_042853
Unique NameXLOC_042853
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_487:92002..99522+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042853 ID=XLOC_042853|Name=XLOC_042853|organism=Clytia hemisphaerica|type=gene|length=7521bp|location=Sequence derived from alignment at scaffold_487:92002..99522+ (Clytia hemisphaerica)
GGAAGCTAAAAGTGATGGTATTAAAAAAACTGGGAAAAATCTAACGTACA
GTACTCTACATTACAAATAGCACATGTGAAGCGAGTTCACTCACAAATTT
TGTATGTGTGTTAATATAGTGTCTGATTTTGGTGTGGACACTTCAAGGTT
ATGGCGACTGCAAATAGATTCGCATCAACAAATGGAGTTCATAGCAATGG
ATTACAACGAAACGGAGCAATTCCAAATAAAAAAGTTGGTAAGTTATATC
TTGTTTCACCCCTGTCCCATTCCATAAAAGTCCAATAAGGGATAGAAAAT
ACATTATTTCCAACAATGGATGTGGGGATTTTGAGAAACaaacccttctc
acagacctgatAGGACTTTttccgaggggtaaatcacttgaaaaaaggtg
tacgatactttctgactttttgaattttcgtttgactttttgactttttt
ttgacttttattcgactttttgactattttttgactttttgtaaaggtgt
acgataatttttcgagtgatttacccctcgactTTTTCATCCagtaggga
taaaaataacggattaaaaatcgatggattgatattcccatattttttta
tggttggggatttcaattcttttgttttcaagtcagaaaattcagtgggg
atgggaaatatagtaaatatttttcagtgaggattggttattttattact
tttagtGGGGACAAAAGCTggaggatattttttccaccggggacgatatt
ttggccaatttttccagtgggaagggttccagTGGCTctgcgagaagggg
gtgttgGGGAGCAACCGTTGTCCATCTTGTACTCTTGTCTCCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtattcgggaga
caagagtaaacAGAGACGACAAAAGGAATTTCACAATGGgtttgaagatt
tttaaagcaattttttcaaacaaagacAATTTTACAGCCAATTCCTTCTC
AGGAGGACATCGGATCTGTGAAACACAAGGTTTTTTTTAGATGTttgata
ccttatcggccaaaacttagtcggccctaagtgagtaaattttggcttgg
tgactaaaattagggccgactaaaatttgggcagTACTGTCAGATTATTT
CGAAATAAGTCAACATAGCTTGTATACCTGACGACGAAAAACAGTCTCCT
GAATATCTGTTTTATAAATTTGATCAACGGTGaattcaacaaaatatttt
tgatcgcTAATGTAAAGTAAGTGCGGATTTCTGCGCTTATGTTTTGATAG
GTTGAGTAAATGGACTTTGGTCAGTATTTTTCCTGAATTAGAAAACAGTT
CTGTGAGCTAGTGAAATCCACTACACTGGTAAAACCCACTGAAATTTTGT
AGACAAAAATCGTCccatttaaaaatgttaaagaatcaaaacataaaatc
gTATGCGACACACCTAGTACTGTGGAAAAGagataaaattgtattttgtt
aTGATAAGAGTGTTTTTCTAAGGAATCTCTTTGCAAATACGTTGTCGTTG
TCATAGCATTTCTTGGAAAACTCTCGTgatacaattcatgatattaatGC
TATACACGGAAGTACCCAAAAATGACCGGGTGTTTGTAACcaatttcgaa
tttaaacaataaaactagtggGAAACGCCCAGgctattttgggtgcttcc
gtataaaacatgaatatcataaattaaaaaaaaaacctgaaGTAATCAGA
AAATATAATAATGAGTCATTGATGCAACCGACAAGAAGCTAACAATTTAT
TGTTGACTAAAATAAATCCTGCCAACTATTAATCTATTCATTGTCTGCAC
AATAAGCGACTTATAAAGGCAATGATATGTATCTTAGAAAAACAACGAAT
AATTACAGGAAAAACCTGACGAACAGTACATtacaaaaatgaagtttctg
tAGTTAGATTTACAAACAAATTATCGTATTTTGAATGTTGTGTTTGGGAG
TTGGtatcaaatatattttctgTTTTGAAAAGAGTATCATACAGTTATGG
CAACTGTAAATGAGTTCGTCACATCAAACGGTGTTGCCAGCTATGCAACT
CCTAACAAAAAAGTTGGTGAGTTCGAACTACATTTTCTTCTAAGCACCAA
AGAAATTGTGAGGAAACTTTTTGGGAACACATAATCAAAGGAACTAAACT
GTGCCCGTGtatatttttgcttaattttttgttgtttctagTTGTCAATA
ATAAAACCAGGGGTACTAGGGTTCGTACCCGGGGTTCGCACCTGACTAGA
TTGACGTGAAAGGTGCCAGTGGTAAAACAATTCTCTAGAGGAAAAAACCT
ATAGTAGTAAAACATAGCCAAAGTCACTTCAATGTGTGCcattttgttta
taattttggCTTTTCTCTGTCATTTTTAGTAAAttgatagaacttatcaa
gggtccccttTTACTATCggttttttcgaaatctgaaaatcaaatatctg
agactaccaacggattcagcgtgaaaagtaggtATATAAAAtagggttat
ttgttaagtctCGAACCTGGCGCCGAGAAATTGCATTTTTGAGGCGAATT
ATCGATGTTTTGGGTGTTTTTcgttgacgtcagcattttcctaggagcat
tttcagaaaaaattattcCTACAGacggatagccctgaattagtagtatc
caaaaatggtatggtttgtcagctttcgatgtctagatctcgagatacaT
TGAAAAtcatcgatattttttgctgagtcagcatttttcagcatatttat
ccACCTTAAGAATGGATTATCTCGAGATTtagacatcgaaagttaacagA
TTTAGAGCAATGATTCACAAAAATGGAGGATTCCTAGTGAGAtaacaaaa
tagtgaaaagCGATATTGCTCATTGAGAATTAGCTAATGCCAATTGAAAT
GTCAACTGAAAGCAAAATGTTTTCTTCAAGGTGGTGGAGTAGAATCCAGT
CTTTTTCTTCCACCATAGTTTTCATTGGTAATCCAGGCGTGGGAAAAAGC
ACGTTACTCAATTGTTTGGTCGGAAAAGCCGTCTTCAAAAATGGCATCAA
CATTGCAATCGGACTAACGAATCAACTACAAACGATAAAATCCAAGGGAG
TTACTTATTGTGATACGCCAGGTTTGAAAGACATTGAAATGCAAGAGAAG
TCTATGGAAGCTATCCTTCAAGCCTTGCAACAAGGAGGAAGATATTTCGT
AGCTTTTGTCATCACGTTGGAATCTGGCCGTGTCAAACCTGAAGACGTAT
CAACCATTGAAGCCGTCCTCGAAAGTGCTCCGGATATCACTAGCTTCGGG
TTGATCATCAACNATTGAAGCCGTCCTCGAAGGAGCTCCGGATATCACTA
AATTCGGGTTGATCATCAATAAAGTATCAAATGCCGTACATAAAGAACTT
TCATCAGACGACGACAAAGTGAAGCTACATTGTGATATCGTGGAAGAGCA
AATATTAAGGAATGTCCGTGGGAGGCGACATCCGACTGTTCATCTTGTTC
CGAAATATACTAATTTGGAAGACGAGTCGGATTTGCACATGGAGCTGCCT
AAGTTAAGCAAATTCATTGAAAATTCATTAAAACTTCGTAGCGTGACCAT
ACTTAAGGAAAACGTGAATACGGCATTTACGTTAACACGGTACCAGACAG
CTTACGAGAGAGAACGGGACGAAATCCAGCGGTTTAAATTAGAACAAAAA
GCTATGGAGAAAATGCGACGCGACGATAAAAGAATGTACGAGAAACGTCT
TTGCGAACTAAAAGAACGGGATGAGAGACGTCAAGAAGAACGTGAACGTA
AACAAAGAAAACAAGAGGAAAGGATTCAGAAAGAGAACCTGGAAATGGAA
AGGGACTTTCATGAAGGACTAGTAGACATTTTAGAACAACAGGAATTAGA
TAGAGCTTTAACACAAAGTCTACtggaattttgatattttctaaaGAACC
TAAAGTAAAGTTCATTCGTTTTGATAAACTTTATTTTGCCCATGCCAAGG
GGGCTTAATTTTAAGTTTAATTGTGGTTTTCACATGGTGGTAAATAGATT
GCAAATTTTAAGCGAAAAGACTTTAGACTTTTAacttttggacattttct
ttgtAGTTCCTTTATATCAAGTATTTATGAaagcttttaaattttcaaaa
aaagattattttgatCACGTTTAGTACTTCCAAAATTCTGCTTTAACGGT
TCCTAGATAAGACAATCAAGACAGGTGTGGGTTGGACATACACGAATCTA
ATCTCCTTTGAAGAacgaaaatcttttaaaagcaTTTAGTTTTCCTCTTA
CCAAAATCATTCCGAGCTTCGGAATCAAGATGGATTCTGAAAAAGATTAC
AACTAATTTTAGCTAATAtaagttttttatcattttctaaaTTCACCCTT
TTAATAAAGGCAAGAAGGAAATACCttaaaagaattaatttcagcaTGAA
ATAATCAGCAGTTTCTCAACATTTTCCAAACTGAACcttgatttattttt
tggggaaaaagGGTAAATTTACCCTACCGTCGCCAAAATTAGTGTCCGCA
TTCTTGTTTTcgaattttgtcaataaaaaaataataattcccAACTGACA
AGAACAAATTTACAATTATTACAAGATATATTTCAATAGAGGTTTCCATG
TTTTGTTAATTTCCGccaagcaaacgttcgaatctgtagagacGACCCCT
TACACAAGTcaaacgtttgcttccataatggcggaagttaCGTAATGTAA
CGTTACGTAAGTCAACAAAACGTGAAAGACCTTATTCTAATTTTACTCTT
TAGGTAAGTACCTGCTAGTTGCTGGCAATCCAGGAAGCGGAAAAAGTACC
GTATTGAATTGTCTTATGCAATCAAGAAGCTCTGAGATGCTTCAAGAAGA
TCAGAGATTCCAATCTGGTGTTTCCATCGGATCTGGCATGACTTACCAAC
TTGATGTCAAAGAACTGAATGGAATCGTTTATATGGATACTCCAGGATTG
GATGATATCGATAAACGAAAACAAGCAGCTGAAGCAATCACACAAGCTTT
AAAGAGAGATGGATCTTACCAAATCATTTTCGTTGTTACTTTAGAAGCTG
GAAGAGTCAgaccagctgacgtggcaacaATCAGCTTGATCCTTGATAGC
GCACCAGAAATTACCAATTACGGCGTTATCTTCAACAAATTGTCCAAACC
TGTTTTACGAGAGCTTACCAAAGAAAATAAACTATCTTTGCTGACTCAAG
TATCTGCTCGAACGACCGAAGGAAAAAAGAAGCCGCTACCTATTCCACTT
TATCTCGAAAAAAACAGTGATCTTGAAGATGAGAAGAATGCCATTGCTTC
GTTACCAGGTTTGGAAGAATATGTTTTGTGTTTGGCACCTATTGTTATCC
ATAGTAACCAAGTTGATGACATCCCCGCAGAGAGTTTCGATAACATCAAA
GCCAAGTTAGAAGAGCAGTTGGATTATTACCGAAAGAATCAAGAAGCAAT
GAAATACCAGATGGAGGAGGATCGGAAGAATTTCAAACGACAGTACGATG
AGATGCAAGTTGAGAATGAGCGAAGACACCAACGTGAAATGCAGGAGATT
GAACGGAAAGAGAAGCAACACCAACACGAGATGAGAGCTTTGAAGGAGCA
AAATGATCAGAATCTAAAAGCGATTAAAGTGAATTTCCAACGAGAAAATG
AAGCAGCGAGAGCAGAAGCACAAAGAAGAGAACAAGAAATGGCCAGGTTG
AAGGAGAATTTTGACGAGATGAAAATTCAAGCTGACCAGAGAGAACAGGA
GAAGAGACAAGCTGAGATGGAGGAAGAGCGAAGACGACTAGAAGCTAGTC
TAGAAGAAGAGAGACGACAGAAGGAGTACGATGAAAGGCTAGCCAAAATG
CAAGCTGCTCAAGAAAGACAGGTATTTATTATGAATTGTAACAAATATTT
TCAGTGGCCGTTTTCGATAGATACTCAAGCTTTTAGTTCCCCTTTAATGC
TGTTTTAGAATATTTATGCAGAAATAACGTGGATAGTATGATAAGGATAG
GGGAGGATTTTATTCATATGTGTCGAGAAAGATGGCcaagaaattttcat
gatacAGTCtagcctctataactcgaacactaACGAGGAATgtaaacttg
ttcgagttaaggaaagtTGTAGAGGTTTGAATTAGGGAGACTCCATTGTA
ATACAGCAACTGCTGTGGAAACCCATCTCAATGTATGTATTGTGAGAGTA
GTCCAATCAATCTCCTTTTCTTATTCAAGCTAAAATGTCAGCTTCACTTC
AAAACAACGTTTGTTTTCCTATTTTTTAAAGGTCAAAGAATTGCAACAGA
AAATCGAAGATCATCAAAAGGAAAAGGCTAGAATGGAAGAGGAAAATAAA
ACACGGATCGTTGCGTTGGAAAGTAAAAAGGAAGACAATGGAATTTTGGA
TCAGATCGTGAATGCATTTGCAGGAGCGGTAAAAGGTGTTGCCAACTTCT
TTGGGATAAAGTTTTGAGATGAAAGACGAAATCTTGGTAGAACTATCTTG
CAATTTGGATTATATTAAAATTTAGATCATCAAACGGTattgctaatttt
tttggtaaaaaaatttaaGACAAACTTGGAAGCgataaaaaaacttaatt
taaaTCTTGGTAAAACTTAAAAGACCTTGCAATTTTAACTGACGAAAAGG
ACAAATTTTATTGAGATGTACGTATATTACCAAACAGTATTGctaatttt
ttggtaaaaaaaattaagggAGACTTACAAGAGATGAACAGCAATCGAAA
TCTTGGTAAAGCATTCTTGATATTCTGGATGAAAGTGGACAATGGTATTT
aatacaaataaaaacattttcaatacaCTTACTGAAATATTATAATTTGT
TATTcttaagcattattttttcaatatcttACTTCatggccgggtagctc
agtcggtagagcattcacTTTACAATCtcagggttgtgggttcgatcccc
ggtcaccgccaactcagcggatgagtagcttagattgggtaatctgatct
aggcggtaagttactgggagc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068694TCONS_00068694Clytia hemisphaericatranscript
TCONS_00068695TCONS_00068695Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068694-proteinTCONS_00068694-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_487supercontigscaffold_487:92002..99522 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.13	18.3	20.38	18.23	8.09	5.91	9.86	11.42	15.41	63.7	14.62	8.72	46.11	40.13	191.09	110.69	60.81	60.58	121.29	205.88	3.15	2.37	40.52	34.67	74.99	83.69	206.05	252.27	59.11	40.06