XLOC_043543 (gene) - C. hemisphaerica

Overview
NameXLOC_043543
Unique NameXLOC_043543
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_511:97878..107397-

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043543 ID=XLOC_043543|Name=XLOC_043543|organism=Clytia hemisphaerica|type=gene|length=9520bp|location=Sequence derived from alignment at scaffold_511:97878..107397- (Clytia hemisphaerica)
CGTTCTTACAGTACCGAAGGAATAATCCTTCCTCGCCGATATTTGATTTT
CTTCCGACTTTATCTTCTTCTAGTCTTCACCCTTCAATGTTACCAATGCC
ATGCTGATGTTGGTTCGTCATGTGATCCTCGTGACAAAGTCTCATGTGCA
GCTAATGAAATATGTGTCACCAAAAGTTACAAAGAACTTTTTGAAGGGGA
AGTCATACCAAACTTTGTGAAAGGATGTGGCAATGGTTGGGACAAATGTG
ATACAAAATGTGATGATGACACTTGGTATGATTGTAAGGTGAAACCATTT
TTTCTTTGATTCATTTATAGTTTACATGAAAGAAAAAGTAAATTCAATCA
TTTAGTGAAGTATTGTTTGTATTGTAAGGTAATACCTTTTGTTTTTTCTT
CAATCATAGTGAAGTTTTCTGCGAATAAAATTTCTGTCACTAAAACATAT
GCACAGCACTATATACAGTAAAAAAAAAATAAAGTGAACTCTGAAATTCA
CATCTAAATTCATCCTTTTCTTAGCAATCATGCTGTAGAGGAAATTTATG
TAACGAAGAAAGCAATGAGAAAGCTCTCTGGTACGCGCTCTCATCGAAGA
ATACTTATAATAGTGGAAATGCTGTGAAGAGTAACATGTGCTTGCTGGTG
GTTTCAGGTGTAATGCTGTTCGTATTCAAGCTTGGTTTTATTTGAGTGGT
GAAACAAGTCTTCAGACGGCTTTGAGTTGGAATCGCCGTAGAGATCTGTA
TGGTTGTTTTTCAATCGTGTCATATTTACCTTTTCTGCTCTGGTGAATCA
AATGAAAAAGGAGCTTTCCTATCATTTGAGTTTTTTAATAACTTTTTAAA
TCGAGAAAAATATCATCTGAATTTTAAAATCTTGTAAAATAGCAAAAATT
GTTTAAAGAGCATTACAAAAGAAAAACTAATGTAAAACAAAAATGTTTCG
TGCAATTATTATTCTTTTGATAGCCAAGCCTGGGGCTCCGTGACATATTT
TCTACGACCTAGCCATTTTTAGTCTATTCCAAAGAACAGTATATTACAAG
ATATTTTTGAGAGGGAGGACGCGGATTAGGCCCGGGAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNACACTTATGTAAAAATAAGACCTTTAAACTTCAAACTCA
ACCATTTAGAAATAATTAGTTTCTTTTAAAGCATATTGTTTAATGGTTAA
TTTTGTGCAGTGCTGAACAGAATTTGTATTTTAAACTATAAAATTCATCC
CGATACAAAACAATACAATGTCAACAGATTTTGACGTCATTTTTCTCGAA
TCCAGAGAAAACATAGCAAAAGTTTATCATCACCCTTTGTTAAAATTGTC
TTGTAAACGTTGCAGAAAGAGTTAGCAAAATACAAAATACAATAAGGATG
TGACTGTTCGACTTAAATATCGACAATCCTGCATTAAACTTGTACAGTTC
ATAACCCTCAGTTTTTACAACAATTCCTTTCGGTCCATTGTTTATGCTTT
GGTCAGCATTCTTCTGGTTACTTGAAATTTCACTTCTCCGAAGATTGCAC
GAGTCTTTATAGCACCAATAAGCCTGGAACGAGAGTAAGTAATTGTGATC
AAATCACCTGTGTTACAGATCCGGTGGATAGCCCCTGCACCACAGGAAAA
TTGTCCAAAAAATCATCCCCGGTGAAAAAAAATACCCTAAAAATTGCACT
CATAAACTATCCCGACTAAGTTTTTGAGCTGGAAACAATAGATTTCCATC
CCCATGGGGGGAAAAGGTTCCGAGACAGGGGTGTGATGAAGAATTAACTG
TGGTGGGGTTTATTTGAAGTGTTGATTTGAAGCAATTTTCCAGCATATGG
GTGGAGATATCACAAAAATTAAAATGCTCGAAAATTGTTGCCAAAAAAAA
CCATTCAAAATTTGACCTGACAATATATACATAGCACATATTCTAAAGTC
TATTCCAAAAAAAATGGCAGTCTGCACTTTTTTAAAAAAGTGCTCTCGAG
GGAAAAATAAATCATTAAAAGTAACTAACTTCGATGGAAAGATAATTCTG
AGCAGCTTGATGTAAGATTTCTTTTAAGAATTTATAAAAAGTTCTATCCT
CTCTCACTTTGAACATTTTTGGCAATTTATCGCCCATTTCGACTTTTATA
GAAGGGTTGTAGCTTTTGATCCAAAAGAGTGAACTGCTCAACAGTATCTT
TCCAACGAAGTATTATCTTTTGCGATACCTTTTTTACTCTCAAGAGGAAT
GTTTTAAAAGTATTGACTGCCAATTTCTCTAATTCTATAAGGTAAAGTCC
TCAATCTTACCTTACACGATAGGATACCAGGGTTCCTCATCTTTTTGGAG
CAATAATTCGTACGCTCAACAGCACACCCTTGTCTCATCACCCGAACATT
CACAATAGTATTGGAAACACGCTTTCTCCTGGTATCGTAATAAAGCAGAC
ATGAAGAATCAGGACCACGACATTTAACAATCACATTGGTTGAATTGCAA
TATTCTTCACCACCACTACAATGGTAACACTGGAGTCCAAAAGCGCCTAA
AATAAAACCAAACGTTCGCTAACTATGTACTGTAGTTTGCTTCTATCCAA
AGATTTCATTATAGCATGAGGAGTTACCATCTTTCAATTATCTATCGAAA
TTGGCCCTTTTAGCCAATTAAATGCTCAATATTTCTCAAAAAGTAAATTC
AATTAAATTTGAAACAAGTACAAGGAATACTCTAAAATAACTTTGGGCTG
TCTAGGAAGTACACGAGTTTTTTCACAAGAACATACTCTATAAGAATATC
CATGATGAAATTGGCCAAAAAAATTTAATACTAAGAATATTCATCATGAA
ATTTGGCAACTGAACCTGTGATTGCCATTTTAGAGCATATTTAACTGTAA
ATTACCAATGATCCCCAGCAATGCAAAACAAAAAATGAGGTATCTATTAC
ATGTTAATTTAAGGTAGAATTTTGGGTCCTAACCTAAGAATACCTTAAGA
ATATTTAAGACGATTTTCAACAAAGAATAAGAATATCCATGATGAAATGA
AAAAGGCCATTCTTATCAAGAAAATCAAAATTCTTTTCATATACCTTTCA
AATCGATCAAAAAAAGCAAGAGTAAGTAAGTGCCAGTGGTTTTAATAAAA
GTCAACATTGTTCCATAACAAAACTTCAGAGATAATTTATCTAAATCGTA
GCGATGTTCTTTTCGTTTCAAAGATTTCAAACATATTTTTTCCCATTCAA
AAAGTCGAAAATATTAAAACTAATTTTCTAAAACGCCTTTTATGAAGAAT
TTTGTCAATAATTTATTATCAAGTTAACAGGGTTTCTAAAATAAATACAT
TGAAAATATTCCCTCTTGAGATTATTTTGTTTTTGATGAACACTTCATGA
TGAGTAATATATTAATCTCTTTCAATTTCAGAGGCCTCCAACTACAGTCT
ACTTTTCAATGAATGGCTATGTTTGAAAAATCCTCCACTTTTTATAAGAA
CAACAATTTCGAACAATTTTAATACTTCAAAACTAGGGATTACAGATACA
GATGGAGTTATATGAAATGTTGTATCATTCTTTGAATTAGTCGCACATCA
TCCGGTGATCTTTTCAATCGGTAAAGAGAAATAAAAAGTTTTAGGAAGTT
GGTACAATGTACAATTATTTTCATTTCCTCGAGCAAACTCAATCATAAGA
TACCTATAGGGTTGTTTCCACTAGCACTAGTAGGCGATTGCGATAGAAAA
AACGGTGGTAAGATGGGCTATGTTTCAACCAGTGTGATATAGCTTCCAAA
ATTTGAAGCTCAAAGAGCCATAAAAAGAAGTGTATCCCATGTGTAGAGAT
TCGAAGATACCATAGAGTAATTGATAGAGTAAATGAATAGAATAATCAGC
AGCTTCAATTGAGGATTAGTTTTATGCCCATCGCCCTGTGCAATCATTTG
TAACCCTACTTGGCCCGGAGGGGGGGGGGCTTCTGATTTTTTTCCCGGTA
CTGGAAAACTGTTTGACTGTGACGAAAATCTTTTATTAGAAAGTAAAATT
AAAAAAATCAGCCTCAAAACAATTTCCCTGCAGTGATTGCGGCCTCAGCG
GCACCCAAAAATAACGCGAAATTCATAAATATCCAAATGGCCTTAAAAAC
TGAACTACTTCNTTTATTAGAAAGTAAAATTAAAAAAATCAGCCTCAAAA
CAATTTCCCTGCAGTGACTGCAGCCTCAGCGGCACCCAAAAATAACACGA
AATTCATAAATATCAAAATGGCCATAAAAACTGAACTACTTGGAGTTATG
GACTGAAATTTTATGAAAAAAAGGCTTACCCAATCTGGAAATATGGAGGG
GGCTGGGTCTGCCAAAATCAAAATAGCCCGGTCCAAGTAGGGTTACGAAA
ATCATCACATCGCAGTGTAGTTTCCAATGCTATCGCCAGACCTTATCGAA
ACCACGCTTATAAACAAGGCAATGAACAAATTAGCTGCGAGAGTAATTTT
TGCATGAAAATATAAATTGAAGGAATTTTTTCCTGACTGTGGGACGAATT
GAATAATTTTGCTCGATTTATCGAAAAATTTGTGTCTTTTGTTTTGTTTT
TTAGTTCTCATGAGAAAAACACTTAGAAAGTTTTAACCCAATCAACCCCA
GGCTTTTTCATGATGACATTCTCGGGTAAATAGGGTTATGGTTCATGCTA
TTGGTTGCCTTGAACCAAAATTAAACTAGCCATAGCTTTCACTAACTGCC
ACCCGCTGGTACAAATGCTTGTAAAAACTAATTAATGCTAATTAAGGCTT
TTTAATGCTTTATAGCAAAAGTTTGGAAATGATTTGGTATAGTTAGAATG
ATTCTTCTCAGCATTTTCTTTAAGATATCAATGAATAAGCTAACATAAAT
GAAACTTATTTTTTATCTAAAAATGTGAATACTTTTTACAAAGAATAAAA
AATTACGAATCTTAAAACATTCATTAGGAAAAGTGTCCAGGTAGAATCAA
TTACAGACAGTTACAGATACTAAACCAGTCAAAAGACATGCAACTATATT
TATTTCAACCAATTTGAAATATAATGAAACATAGTAGAAGCAAACAGCAT
AAGAAATGCTATGAGCCAGAAACATAACGAGCAGGAACCAAAAATTGACA
GGTAACAACGTACTTAGGAGTTTTTCCAACGGTTTAACAAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAT
GGACAAAATTGTTTACATTAAAAAGATATGCCAGTTATCTTGCAGTTGTA
ACAGCAATATCGTGTAGAAGGATGGAAAATCATGACGTAATGTGGTAATA
GTAGCAGTAACGAGGTAATATTGCGTTGTCAAGGTAAACGAATTCTCATT
CATAAAAAGCTTAAAGGGAAAACAAGAAACATGAAATTAGATGATATGGC
GAAAAAATGCTCTGTTCGCGTTGCAACGGGTGTTAAAAATGCATGCGGGC
GGACTGGCGGTCAAAACATTCCCGGTTTTTTTTTAATCACGCCAGTAACT
CATGGGCGGGTGGTAACGCGAGCAAAGCTATTTTTCGATGGTCATCAGAG
CAATTGAGAAAAAAGCTATACTTTAAAAGAACAAATCGCCTTTCCCAGAT
TTTTTTCCACATCTCGCACCGGAAAATCAGTGGAAAATTTGATGCGGGCG
GGTGACGCGAATAGAACAATTTTTCGATGACCGCCTATATGATGCGGTGA
GTGTACTCTGAAATTTCCTCAAAAATAGTTCACAAAAGTTTCTTTCAATC
TTTGATAATAATTTCCCAAATAGTGCCTGGTAAGTATCAACAAGGTTAAG
CATAAAAGATTAATAAAACCAAGTCTTATAAAAGTACACAAAGAAAAAAA
TATTTGTACTTACTGTCGAGAAGTATACCATAACACAGGATTTTTATAAG
CATTCTTGTTGAGAGTAGAGTATGTTGAATGACGATTGTCGAATAAATTT
AGTTACAGTGGAATTTCGTTGCCAATTCAACCACCAACAATAATCACTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCAAAACAAAAAACGCAAAAATTCGAGATTCCAGTCCAATATCTATGCGT
GAAACTATAAGTGCCTCCTCGTCGCTGCGCTCCTGCGGGGGCAAAAATTA
AGTTAAAAGTTTCATATACCAACATAACTAAACCAAAACCAGGACCGATT
CTGGACTAGTATTTTTTAGAGAGAATCATAAGATAATTTGTATATGGTTT
ATACATTTAGAATATGCTTGAGCAAAAAAAACTGTTCGCGCTGCATCAGT
TTTATGATAAGCTTGGCGACCCGATTTAGCTCTAGTTTAGACGGCCCACT
TTTTGCCCTGCCTATTCTAATTATGAATTAAAGAGGGCATAAAGTGGGCT
GTCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAAGCAAAGATTTTAACAAC
CAACTTTGTGCCCTCTTTTTGCCTACTCTAACAATTAGAATAGGCAGGGC
AGAAAGTCGGCCGTCTAAACTAGAGCTTAGAATTCTCTTGGTAGCTATTT
CACTGTTCCTATAAAAGAAAGAGGCTTTTTAGACTAAAGAAGTTGCTGAA
AAGTTGGAGGCCTCTGAAATTGAAAGGGATTAATATATTACTCATCATGA
AGTGTTCATCAAAAACGAAATAATCTCAAGAGGGAATATTTTCAATGTAT
TTATTTTAGAAACCCTGTTAACTTGATAATAAATTATTGACAAAATTCTT
CATAAAAGGCGTTTTAGAAAATTAGTTTTAATATTTTCGACTTTTTGAAT
GGGAAAAAAATATGTTTGAAAATTTTTGAAACGAAAAGAACATCAATCGC
TGTAAAATAAGCTAAAATAACATTTTGGAGAGGAAAAAGCTTAGTTGACC
CTAACCATGAATCAAAAGCGCATTTTTATTACATTTCTGTGGTTAAATTG
GTTGAAAAAAGGTAAAGCCATTCATGCTTCGCAGAAGTGCCAGGGTAATG
AGGTAACAAGTTCGATAAAAAAGTACAACTTTAAGACATAAGAAAGATAG
ACACCGTCGAAAATGATATACTGTTCCTGAATGAGTTATTATGGTGAGAA
GGTCTATGTTTTGGCAGATAGTCAAAATGTCTCCTCGCAATTTAATTTTT
TTAAAGAAATTCTATTGAAAACATTAATGTACCTTCTTTCAGTTCACATG
TTGGAGTGTTATGAATGTTTTGCTGACGTCGGCAGTTCTTGTGATCCTAC
AAAAACAAGAGATTGTTCTGCTAATGAAATTTGCTTGACAATGTCATATA
AAGAATCTTATGAAGGGAAAGTCCTGAACAGTTTTGTCAAAGGTTGCGCC
AGTGGATGGGATAGCTGCGAATCAAATTGTGATGATGATTCAATATTCGA
CTGTAAGGTAGGTTAAAAATTGTTTTTCTAACCATAATAACTACATTATA
GACTTAAAGCATGAGTTAAACACCATATAATATATTACCTGGACGTAAAT
TGGACATATCTACCATATAATACTTCAGCATCTTGAGCATTTTGTCTGTT
AACTGGAAGAGTCATTTATATGCCAAAAAACCAATCAGCTTTTTGTGTTT
TATACTAAAATCTACAAAATATAGAAAAAATAAGAAAAAATATTAGAACA
GCAACCTTTACATTTCTTCTTTTTCTGTTTTTAGGAATCATGCTGTAGAG
GAAATTTATGTAACGAAGAAAGCGATGAAAAAGCGCTCTGGTACGCGCTC
TCATCGAAGAAAACTTATAATAGTGGAAATGCTGTGAAGAGTAACAAGTG
CTTGATGGCGGTTTTAGGTGTTATGCTATTTGTACTCAAAATTGGTTTCC
TTTGAGAAGTGAATGGACTGTAACTGAAGTAGAAATTACAAGCATCTGTC
GTGTAAGTTTATCTAAGGATGACGAATGACTTGGAATACTCGTGAATGGA
AAATAGAACAATTCATTACGTTGAATTTTTTTATAATTTTCTTCATCGAA
AAAAAAATATTATCTGAATTTTAAAATCTTGTAAAATAACTTAAATTTGT
TTTAAGCTATCCCAAAAGAATAACTATTATAAGCAAAATAAACAAAAAAG
TCACAAAATGCACTAAAAATATAAGGACTTCAGTCACCAATTGACAAACC
AAAACGAGTGAAGACTTCAAGAAACGAGTATGTCTAGAAGATCTTCCAGT
CATATTATTTCGATTTGTATTATTAAAAGAGTTGGGCTCAAATCAGTTAA
TCATCACCATGGTACTTAAGTAGAGAAAATTATAGCCAGGCAATAACACC
TTTAGGATGGACAAAATATCCCAACTGAACAATCCAAAAACGAAAAAATT
GGTAAAAATATCTAAAAAAAAATCCTTAACAAGAAGCCCAAATCCGATTA
AGGATTTTAAAATTCAAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069954TCONS_00069954Clytia hemisphaericatranscript
TCONS_00069953TCONS_00069953Clytia hemisphaericatranscript
TCONS_00069952TCONS_00069952Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:97878..107397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11	0.16	0.58	0.48	0.28	0.17	0.51	0.91	1.78	1.75	1.74	1.34	1.67	1.35	0.69	0.32	2.95	5.49	2.73	4.3	7.28	8.58	2.58	1.81	4	3.74	4.53	4.11	0.19	0.41