XLOC_044321 (gene) - C. hemisphaerica

Overview
NameXLOC_044321
Unique NameXLOC_044321
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_60:1680285..1690888+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044321 ID=XLOC_044321|Name=XLOC_044321|organism=Clytia hemisphaerica|type=gene|length=10604bp|location=Sequence derived from alignment at scaffold_60:1680285..1690888+ (Clytia hemisphaerica)
acaaaagaaaaacatcctCATCTTTTCACGAAAGAAGAAAAGTTCGCTTG
GGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGAGGAAAGTG
CTTACGAGTCTTACGAAGCTTGGTATATAGGAATCAGTTCAGTTTTGACA
AACCGAAGACAAGTTACTATCATCAGTGATGGaacaaaatatgttttcat
gaAGAAACATGAAAACAAAACTGGTCAAAGACTATTTATTGGATTTAGGG
AAAAAGTACGTTATAATTATACAGCGCAAGACTATGAAATAATCTTTGAA
GGTCTGAACGAAGAAACGATGAAAAATGGACGATTCCTCCTTCTCCATCC
CAAAGTACCTGAAAAGCGTTTGAATTTTGTGCCATATCATGGTAATAAGG
ATTTGAATTGGTGGGATCTCGAAAAGGTTACTGAAGATTATTACTCTGGT
AATGAAAAATCTGTAATCATTTTAGTATTTTATAATTAATTTGATCATCA
TACATATTTTTAGGATACATTTGACTCTCAAACTTGAacggggaattttg
ttcgaattaaagagagattcaaattatagaaaatatttcaagaggATTTC
TCATTGACGGGGgctggaaacaagttcgaattatagaaagattttaataa
cagaagttcgaataagcgaaagTTGTGctgtaactgttttcataaattca
aaaagtatcaaaatgcTAAATTCAATTTCGGTTTCCTCTTCCTTTTCCTT
CCACTTAAAATAATATGAAAGACGAAATATATATTAAGTAAAATTGAGGa
agtccaaaattttcgaagcctgcgaaaaaaattttttaggcaaatttggc
caaaaaaacgggtttttcggactttgtgcaaaattggatcattaattttt
tttgattttttccatgaaagaaggctaccatcataggtaaaagatggctg
aagcagaattttgcaaaaaaaatttgttggctcaaaaaacgcatgtttat
ctataagaattactattaataagcatacatcaatgttcttagtcaaatta
ctcaatttttttatgagatagatgttttttttgctcatgaggatttcatt
ttgaagaatatgtgtgtttagacaggaaatttgggttgcttggcgtgttt
ttataaaaaaactgaccaaattcgatatttttttataagcacattatcaa
ttacttaggtattagcttttctcgaggtggatctttcattctttatgatt
tattgcacaaacatgcataactataaaccctcgaatgtgacggagcttga
tttttggataaaaaaattttggggtaaatttcagctaaaaaacagctaaa
aaacgggttttttggactttgtgaaatattggatcattgtttttttctga
tattttgcatgaaagtaggtaaaagatggctcaagcagattttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcactattaataagcatac
atcaatgttcttagccaaattactcaattttttgatgagatagatgtttg
tttttgctcacaaagtcttgaatatgaaagaatatatcaagagcatgaaa
ttttggtttctaaacgttttgtttataagaaacaaacgactaattttaat
agatcgtcactatttgtgttctgaatgattgtttaatggtcacgtcacgt
agatatcaattataaatgtgttaaatgcataaccaggtaggtccataaaa
gtatcacttgttaagcCTTAAAAGTAAtttaggattttattttcactatt
ttgtcaGTATTCTTGTGtaatttcctaaaaaattttaaaaaccaaaaagc
aacctaaaaatgttcgtaatataaagtaaaattgataaaattgattCATA
AATAGACACTATTATAtgcttcttaatttttttgtttatcaaaggaatat
gttcttgtatagtttgttcttataaaaaaggtgtattgcatAAACGAGTG
AAACTCTGTTCccttcttaaccctattcaacctaggcttttagaggcggt
ttaaaaaaaagggggggaaaaaaaacgccccccccccccccctttttaac
ccctttcaacctaggcttttaggggcggttcagaactggggggggggggg
ggcttttcctgtaccactcCTTaatttttgatctagtgggtctttttgga
tgaaatttggcacacaagatccttgtcacataaggtaacttttgacaaaa
aatttttttgatgacgtcactaatCATGCcgaaagtgagcaaaaactcaa
aatttcctttgttcttaaaAATAGCTATGGTATTCtaaaaaaagctttag
aaaaaagttgcctgagtttaaaatgtttattttatcctagatattcaata
aattacggtttaaatgatatatttgacattaaaaataaattcatattgga
aaagtgtcactttttctgacagactttatgtcagaaatgtcatcatgctc
aaagtgtgaaaatttttaggtgtcaatttttttttattttaaagctaaat
aaaagttaggactttacagaaaatttcatggcaaaagctctattatttca
ggagctattaccaataatttgacctacgaacagaaacagcccccccccta
ggccgaatagggttaaagtttTCATTATATTGTTAGCAGAAAGGTCTATT
TGGGAATATATTTCACAAAAACTTCTTTCCATGAATAATTGTAACCATGT
CAATAAGTTTTCATCAAAAATCTTACTTGAAGTGCAGTTTTACGAAAACT
AAACACTTGCCTTGTAACTGTAAAACAGAAGTATCAAATTGAATGTAGAT
TTTGAgtttagttttattttttactccTGTCTTATAGCCCCTGGTGAAAC
TTCTTTACACatagtggggatgaaaatttttaattactgtaaGTAGAGGT
AATTTTAAGAACTGCTTGAAATCGGGCAATACAAAAATgcatttcttttc
tttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTATTTAA
TAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaagattt
gaataacagaagttcgaataagcgagagtttgctgtaactgttttcataa
attcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTCCTTT
TCCTTCCACTTAAAATAATATGAAAGACGAAATATATATTAAGTTAAATT
TGAGGAAGTCCAAAATCTTCGAAACCTGCAgatcttcttaactttttgag
tttttagaaGCTTTACAATGtagtttaaaatttcattttcaccattttgt
agtTTCCTGAAAATTTTGGGTTTTTTCGAGACCAAAAAGtaatcttaaaa
tgttccttatataaagtacatgtttttttatcagcattgcacttataagc
atatctaggctcagatatggggaaaaattaagcatatggcaagcatttgc
ttgagcctacaaaaaatatttttttcctgataTTGGCTTTTCTTGGCTGG
AATTTCACTGATTTTCAGTATtaccctaaatttatgctttagatttaagc
atcccctcaagcatttttcagcctttttaAGCGTTCGACCTatgcatctc
tgagcctgttttcggatttttgtatgcttataaaaaaaaacatgtaatgt
gCTAGCAAGTCGCTGCAGAAAATTGAAATCTGAAAATATTCATATTTCAT
ATTTGCCTATGAATAGGATTAGGATTAGattaggggtagaaaccaatcaa
gtagTCAGACTGCTGAAAAATAAGGTgaaatgatgaaatggatttacacc
attcttataaaaacaagtaatactttaatggacctacctatttataaaac
gaataattagaatttaatggaagtaatgtataattttaaatttcgattta
tatatctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAAAAGCGTGTAGACAAAAGTTCTTAA
TTAAAAACCCATCTAATGATGTTGAACTGCtttgcaaataaaaaatgtaa
taCGAGATTGTCTGTGTTATCTTTATGTTATTTGTATGTATTTTATAAAG
AGAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTGAAAGT
GCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAATAATAT
GGATTCTGCACATGGAGACGAGAGAAATTTAGCTAACAGTGCAAGTGGGA
GAAATGTGCACAAAAGTGCTGACGATGAAGAAATCATCCAACTCAAAGAA
GAACATCaaagagaaattcaaaaattgaattatgaGTCAAAGATTGAATT
GATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGT
TAGGTCATCAATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAA
ACGAAACAAGTTGCCGCTGACAAAGATCTTCAAAATAAACTgactgaaat
ggaaaaacaactTGCTATAAAGGACAAGGAGATATTAGACACGAAAAACC
AGATGGCACTCAAAGAAAACCAATGGGAAAACGAATGTAAAATGAAACTA
ATGAAAAACGACAAGGAAATgctggaaaaagaaaatgatttcaaaCTTCA
AATCAAAGATTTAGAAAGCTCCAAAAAGAACAACAACCAACCGGAATCTA
AAATGGCAgtcataaaagaaaaatatcctCATGTTTTCacgaaagaagaa
aagtttgCTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATG
GGAGGAAAGTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAGTT
CACTTTTGACAAACAAGAGACAAGTTACTATCATCAGTGATGGaataaaa
tatgttttcatgAAGAAACATGCAAACAAAACTTGTCAACAACTACTTAT
CGGATTTAGGGAAAAAGTAAGTTATAATTATACAGAGCCAGACCATCAAA
TAATCTTTGAAGGTCTGAGCGAAGAAACTATGAAAAATGGACGATTCCTC
CTTCTCCATCCCAAAGTACCTGAAAAGCGTTTGAAGTTTGTGCCATATCA
GTATGATAAGGATTGGTGGAATCTTGAGAATGTTACTGAAGATTATTACT
CTGGTAATGAACAATCTGTAATCATTTTagtattttgaaattaatttgat
CATCATACATATTTTTAGGATACAGTTGACTCTCAAACTCGAACGGGAAA
Ttctatttgttcgaattacagagaatattcaaattatagaaaatatttta
agagggtttctcattgacggggactggaaacaagttcgaattatagaaag
atttcaaataacagaagttcgaataagcgagagtttactgtaactgtttt
cataaattcaaaaagtatcaaaatccTAAATTCAATTTCGGTTTCCTCTT
TCTTTTCCTTCCACTTAAAATAATATGAAAGACGAAATATAAATTAAGTT
AAATTGAGAACATCCACAATCTTCGATGTCTGTGAATGTTCttacctttt
tgagtttttaagctTTACAATATAgtttaaaactttattttcaccatttt
gtgagtattcgtGTGTAATTTCCTTAAGAATTTTGATCTTTTAGAGACCA
AAAAgcaaccttaaaatgttcttaatataaAGTAATGTGCTATAAAGTCG
CTGCAGAAAATTGAAATCTGAAAATATTCATAAATAGACACTATTatata
ctttttaattttttgcctGATCAAAGCAatatgttcttgtatagtttgtt
cttataaaaaaagtgtattgcgTAAACGAGTGAAATTCATTATATTGTTA
GCAGACAGGTCTATTTGGGAATATATTTCACAAAAACCTCTTTCCATGAA
TAATTGTTACTATGCCAATAAGTTTTCatcaaaaatctaatttgaaGTGC
AGTTTTACGAAAACTTGTAACTGCAGAAAACAGAAGTATCAGATTGAATG
TAGATTTGGAgtttagttttattttttactccTGTCTTATAGCCCCTGGT
GAAACTTCTTTACACATAGTgtggatgaaaatttttaattactgtaaaTA
GAGGTAATTAAGAACTGTTTGAAATCGGGCAATACAAAAATgcatttctt
ttctttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTATT
TAATAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaaga
tttgaataacagaagttcgaataagcgagagtttgctgtaactgttttca
taaattcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTCC
TTTTCCTTCCACTTTAAATAATATGAAAGACGAAATATATattactagcc
ggtacccgcgCCGGCGTCGCAcaccggttaagctgtagctgaacgcactc
aAAGTCCTTttgatgttgaagctggcttaaaaaatgatcaaactaataaa
aagatgtcttcaaagtttgactctaaccctcccccggagatctttttctc
gcttcgctcgcattaaatacgccgtccagttttcgacaatttgagaaaat
gtcatggtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtgttggatttttaacaactctattgtgagataa
taactttgttgatcaaaataagaaaaaggttgccgtaacaagcacaaaat
cctatatttcTAAGGGTCCCTTCTCATAAAATaatcgataaatttcaaaa
agaattctatattacgaataggtaaccttttaattaatgatccatcagaa
tttgaaacccccctcccttttagacgtaaagatttataatgaagaaattt
tcaaggaaaatgtgctgaaactctcaaaattagcactgtgttcgcccaaa
aatacatcgatatgaaatcatagaactTTTGTAACTTgactttgagaaaa
ttattttcgtaTCGTgtttgaacaagaactttttgcataataagtttatt
tcaatcaggataacattctcacttctgttcttataaatttacatttcgga
tttttttgcttccaatgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCaa
caaagaaaagccgctttgaatagatttataaaagatttcaacgatcattt
aggtcattaccgagacgttttctctccatctatatctttattacctctat
gatcagatttaaaaagataaataagtcaattctaaattgctttttttaaa
cccttgtcataacttttcgaaattaaacatgtaaaatgacgaAGTTTTTA
ATAGTATCCAccacttgaaaatttttatatgaagaaaaagatggactaat
ttcttctcttgctttttatcgccctttgcTGAAataaaggctgaataaag
tctaaaccatgCTCTATTCGATCTgtgaatcaaaacaaacttatcgagaa
caaaacattgcttgcgaaatcgaaagtatgcgcgaatccaatagaacaaa
tttgtggagcaatagactaaaagtcataattttaaaacacaaacaaagcg
aaaacgaaagtggtgacacacagacacacaaagcaccgctattaatatat
agaagtTAAATTTGAGGTCCAAAATCTTCGAAACCTGCAgatcttcttaa
ctttttgagtttttagaaGCTTTACAATGtagtttaaaatttcattttca
ccattttgttagTATACTTGTgtaatttcctgaaaattttggGTTTTTTC
GAGACCAAAAAgtaaccttaaaatgttccttatataaagtacatgttttt
ttttataagcattgcacttataagcatatctaggctcagatatggggaaa
aattaagcatatggcaagcatttgcttgagcctacaaaaaatattttttt
cctgattttggcttttcttGGCTGGAATTTCACTGATTTTCAGTATtacc
ctaaatttatgctttagatttaagcatcccctcaagcatttttcagcctt
tttaAGCGTTCGACCTatgcatctctgagcctgttttcggatttttgtat
gcttataaaaaaaaaacatgtaatgtgCTAGCAAGTCGCTGCAGAAAATT
GaaatctgaaaatattatatttcatATTTGCCTATGAATAGGATTAGGAT
TGGattaggggtagaaaccaatcaagtagTCAGACTGCTGAAAAATAAGG
Tgaaatgatgaaatggatttacaccattcttataaaaaaaaagcgtgtag
acaAAAGTTCTTAATTAAAAACCCATCTAATGATGTTGAACTGCtttgca
aataaaaaatgtaataCGAGATTGTCTGTGTTATCTTTATGTTATTTGTA
TGTATTTTATAAAGAGAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAA
AAGCTTGTGAAAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATA
GATATTAATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTCACAG
TGCAAGTGGGAGAAATGTGCACAAAGTTGCTGACGATCAGCAAATCATCA
AACTCAGGGAAGAACATGGAAGAGAAATCCAAAAATTGAACTATGAGTCA
AAGATTGAATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGA
CAATCAAACGTTAGGTCATCGATTGGAGATGTTGAAGTTGAAGAATTCAC
ATGAAGCTGAAACGAAACAAGTTGCCGCAGACAAAGATCTTCAAATTAAA
CTgactgaaatggaaaaacaactTGCTATAAAGGACAAGGAGATAGCAGC
CAAGAAAATGGAGCTAATGACAAAAGACCAGGAAATGCtggaaaaaaaat
gatttcaaactTCAAATCAAAGATATGGAAAACTCCAACAAACTGAAATT
TGTGGAAATGGTGAAAGAAAAAGATGCGACAATCCAAAGACTTCGAAATG
AAAtcgaaaagttcaaaaagaacaacaaccAACCAGAATCTAAAATGGCg
gtcacaaaaaaaaaacatcctcATCTTTTCacgaaagaagaaaagtttgC
TTGGGGAGCTGATGTTTTCTTCGGATTCAGAGATATGAGATGGAAGGAAA
GTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAATTCACTTTTG
ACAAACGAGAGACAAGTCAATATCATCAGTGTTGGaacaaaatatgtttt
catg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00071316TCONS_00071316Clytia hemisphaericatranscript
TCONS_00071317TCONS_00071317Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1680285..1690888 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	3.32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0