TCONS_00003582-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003582-protein
Unique NameTCONS_00003582-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003582-protein ID=TCONS_00003582-protein|Name=TCONS_00003582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MQDTIDKPIKNMKDEIDVGSLKTKKTRASAEDLGPVLELIFKYLDAISLR
AAEKVCKKWLNCIINSRLWKNQIKEKAHREIVWKGLGKRRGWMDSLNTLS
EEFDHKYFRALYSKTEKDIKRLVCNWRKGRYHVDRLDSGGLGVNWLQYDD
QKIVTGQQNGEIKVWDRHTLACNKVLDGHTKGVLCLQYDGDILITGSIDG
TVKVWGLTSGELMNTLEHHTKPVAILVYKHGVLVTSAALENVIYVFTVHS
SKDIKLRSKLLGYRTDCLALDLDERYIVTAARDFPQRCGDTDIKVWNTKT
CEHVRDITGSEEGTITLQYRYPLIVTCCFSFDMKVWDVENGTCLRTFKGH
PKLLGFLRFNNKYMVSADGDGVCKIWDMEAILDQQRKEEDLLLASFQEYH
SDGSILANTFANTNHLQFDDFIIMTGNSDGTIMIYDFDEEKISQHQGRKN
SK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001999XLOC_001999Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003582TCONS_00003582Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001810F-box_dom
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 153..167
score: 27.15
coord: 193..207
score: 41.6
coord: 364..378
score: 31.23
IPR001810F-box domainSMARTSM00256fbox_2coord: 34..72
e-value: 6.5E-4
score: 29.0
IPR001810F-box domainPFAMPF00646F-boxcoord: 36..73
e-value: 5.0E-7
score: 29.3
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 35..101
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 169..206
e-value: 5.1E-7
score: 39.3
coord: 300..337
e-value: 73.0
score: 5.2
coord: 403..436
e-value: 43.0
score: 6.7
coord: 209..247
e-value: 130.0
score: 3.6
coord: 129..166
e-value: 54.0
score: 6.1
coord: 340..377
e-value: 2.6E-4
score: 30.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 341..377
e-value: 0.0022
score: 18.7
coord: 172..205
e-value: 4.7E-6
score: 27.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 176..215
score: 14.352
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 347..379
score: 8.804
NoneNo IPR availableGENE3D1.20.1280.50coord: 19..126
e-value: 8.8E-8
score: 31.7
NoneNo IPR availableGENE3D2.40.50.140coord: 314..370
e-value: 8.7E-10
score: 37.6
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 371..452
e-value: 3.0E-6
score: 25.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 199..313
e-value: 4.6E-16
score: 58.4
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 127..198
e-value: 9.3E-16
score: 57.4
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 364..378
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 136..386
score: 27.632
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 142..436

Blast
[Close]
BLAST of TCONS_00003582-protein vs. Swiss-Prot (Human)
Match: FBW1B (F-box/WD repeat-containing protein 11 OS=Homo sapiens GN=FBXW11 PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 3.555e-100
Identity = 172/433 (39.72%), Postives = 258/433 (59.58%), Query Frame = 0 
Query:   26 TRASAEDLGPVLELIFKYLDAISLRAAEKVCKKWLNCIINSRLWKNQIKEKAHREIVWKGLGKRRGWMDSL--NTLSEEFDHKYFRALYSKTEKDIKRLVCNWRKGRYHVDRL---DSGGLGVNWLQYDDQKIVTGQQNGEIKVWDRHTLACNKVLDGHTKGVLCLQYDGDILITGSIDGTVKVWGLTSGELMNTLEHHTKPVAILVYKHGVLVTSAALENVIYVFTVHSSKDIKLRSKLLGYRTDCLALDLDERYIVTAARDFPQRCGDTDIKVWNTKTCEHVRDITGSEEGTITLQYRYPLIVTCCFSFDMKVWDVENGTCLRTFKGHPKLLGFLRFNNKYMVSADGDGVCKIWDMEAILDQQRKEEDLLLASFQEYHSDGSILANTFANTNHLQFDDFIIMTGNSDGTIMIYDF-DEEKISQHQGRKNSK 452
            T    + L  + E I  YLDA SL AAE VCK+W   I    LWK  I+     + +WKGL +RRGW   L  N  ++   + ++R+LY K  +DI+ +  NWR GR+++ R+        GV  LQYDD+KI++G ++  IK+WD+ +L C KVL GHT  VLCLQYD  +++TGS D TV+VW + +GE++NTL HH + V  L + +G++VT +  +  I V+ + S+ DI LR  L+G+R     +D D++YIV+A+       GD  IKVW+T TCE VR + G + G   LQYR  L+V+      +++WD+E G CLR  +GH +L+  +RF+NK +VS   DG  K+WD++A LD +     L L +  E+   G +          LQFD+F I++ + D TI+I+DF +    +Q++ R  S+
Sbjct:  121 TALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSK-DRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSAS-------GDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH--SGRVF--------RLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSR 535
The following BLAST results are available for this feature:
BLAST of TCONS_00003582-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBW1B3.555e-10039.72F-box/WD repeat-containing protein 11 OS=Homo sapi... [more]
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