TCONS_00003755-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003755-protein
Unique NameTCONS_00003755-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003755-protein ID=TCONS_00003755-protein|Name=TCONS_00003755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp
MLHAEEYYAPTDVGLKKGEAMYQMANTNILQENMGQPLNDKVGNTTLLNE
MGEFKPMNGQNGSSNMDEQRALQLAFELSMLGLTSEEEMSYNELRMKKSM
NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVT
GRKEDVGMAKREILQAAEHFSQIRASRRNSSSLSPLGSPAPTAPGHITKQ
VRVPYRVVGLVVGPKGSTIKRIQQATNTYIVTPSRDKEPIFEVTGLPDNV
DRAKREVEQHIALRTGGIFDPTHPELTDQLLNGFGNSSLFSPTGSSSGGS
FSSLLDNHSTNPLCQRSHSVDSFSYLSGQSNASSKFSDLSSAGTSPFNNN
NNNAFFCDTVIPSPTADIENGMGQFDPAPGSPAPSLWPEMMIPRSAAIGR
LGGPQMQPMPPTRSLSVSTFTPENSEVPQLRRLLSESAADPSADLQSTYS
HFNGTTVTSTVQSPMIPEASIIDMTKVNTSDGESQSSSPDWMANKQNGLP
TQQPVPGKNQCFICNTGKVVAALVPCGHNLFCLPCAEQMKENEGDCPVCQ
KKVEAFLRIIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002093XLOC_002093Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003755TCONS_00003755Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 511..549
e-value: 3.9E-5
score: 33.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 511..550
score: 10.734
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 510..553
e-value: 2.16772E-6
score: 44.3588
IPR004087K Homology domainSMARTSM00322kh_6coord: 195..262
e-value: 8.9E-15
score: 65.1
coord: 100..168
e-value: 5.9E-9
score: 45.8
NoneNo IPR availableGENE3D1.10.1170.10coord: 418..561
e-value: 2.4E-12
score: 46.8
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 508..554
e-value: 5.3E-12
score: 45.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 478..500
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 111..163
score: 10.441
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 196..257
score: 14.823
NoneNo IPR availableCDDcd00105KH-Icoord: 103..164
e-value: 8.55698E-11
score: 57.1847
NoneNo IPR availableCDDcd00105KH-Icoord: 198..258
e-value: 4.25054E-14
score: 66.8147
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 510..555
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 199..258
e-value: 1.1E-13
score: 50.6
coord: 104..164
e-value: 1.5E-9
score: 37.4
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 88..184
e-value: 4.1E-23
score: 80.8
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 196..262
e-value: 3.8E-18
score: 64.4
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 105..170
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 193..262

Blast
[Close]
BLAST of TCONS_00003755-protein vs. Swiss-Prot (Human)
Match: MEX3C (RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens GN=MEX3C PE=1 SV=3)

HSP 1 Score: 320.472 bits (820), Expect = 1.770e-101
Identity = 220/491 (44.81%), Postives = 276/491 (56.21%), Query Frame = 0 
Query:   94 LRMKKSMNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVGMAKREILQAAEHFSQIRASR-RNSSSLSPLGSPAPTAPGHITKQVRVPYRVVGLVVGPKGSTIKRIQQATNTYIVTPSRDKEPIFEVTGLPDNVDRAKREVEQHIALRTGGIFDPTHPELTDQLLNG----FGNSSLFSPTGSSS--GGSFSSLLDNHSTNPLCQRSHSVDSFSYLSGQSNASSKFSDLSSAGTSPFNNNNNNAFFCDTVIPSPTADIENGMGQFDPAPGSPAPSLWPEMMIPRSAAIGRLGGPQMQPMPPTRSLSVSTFTPENSEVPQLRRLLSESAADPSADLQSTYSHFNGTTVTSTVQSPMIPEASIIDMTKVNTSDGESQSSS---PDWMANKQNGLPTQQPVPG------------KNQCFICNTGKVVAALVPCGHNLFCLPCAEQMKENEG-DCPVCQKKVEAFLRIIS 561
            L  +KS+N TECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEP+FVVTGRKEDV MAKREIL AAEHFS IRASR +N  +L  L S +P  PG  T QVRVPYRVVGLVVGPKG+TIKRIQQ T+TYIVTPSRDKEP+FEVTG+P+NVDRA+ E+E HIA+RTG   +    E  D   NG    F   +L S   SS+    S + ++ N+  N       S  + SY       S++ +D S   TSPF  +  N +F DT+    + D+      FD  P S A ++W                              + F P N         LS   +DPS +++   +   G+  ++   SP  PE+    + +   SD  S  +    P ++    NG  +     G            K+ C IC   +V+AALVPCGHNLFC+ CA ++ E     CPVCQ  V   ++I S
Sbjct:  224 LLRRKSVNTTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNGPALGGL-SCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELN--EENDFHYNGTDVSFEGGTLGSAWLSSNPVPPSRARMISNYR-NDSSSSLGSGSTDSYF-----GSNRLADFSP--TSPF--STGNFWFGDTLPSVGSEDLAVDSPAFDSLPTS-AQTIW------------------------------TPFEPVNP--------LSGFGSDPSGNMK---TQRRGSQPSTPRLSPTFPESIEHPLARRVRSDPPSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKICEKRTPSCPVCQTAVTQAIQIHS 659
The following BLAST results are available for this feature:
BLAST of TCONS_00003755-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEX3C1.770e-10144.81RNA-binding E3 ubiquitin-protein ligase MEX3C OS=H... [more]
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