TCONS_00004587-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004587-protein
Unique NameTCONS_00004587-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004587-protein ID=TCONS_00004587-protein|Name=TCONS_00004587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
AQNITDAILLRDIANVSNPWTAKGLILKDNLITHFPSEYFVNFTNLTEID
LTRNLLTKPPANLSVYIPSIVNLCISENIIREITKDDFMGYQNVKEVNIS
NNIIMELESGIFSNLPKLQKVFIDNNSIKLLKNGVLDDAMELLWISFNGN
GIEKIEKDVFKLHVKLDRLWFNNNNLSELPEGLLKNQHLNRLEMQNNQFT
DFPANAFNSQLVKLLNNRLTTLRKEWFLSSPDDLDVEGNPLHCDCTLYNV
IQALISDNNKFDIFGNCRSPPHVKDIYEDIQTRNKLNCTACSVNNCQNNS
TCQIINETSYNCSCSDEFQGRFCQYENQCLQSPCGNNGTCLLSNDSFVCS
CMNEFGGTRCHLIQLCYSDKPCENSGQCNVHKGTTMNTCTCLFGYLGSRC
QINLGFIVLVCLIVFATLIVVCILCFYKPKHGDIFIVEKGHLLSKIGVDN
PSFRYSGQSSTSQN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002581XLOC_002581Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004587TCONS_00004587Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 365..401
e-value: 0.22
score: 20.6
coord: 290..324
e-value: 0.002
score: 27.4
coord: 328..361
e-value: 0.0031
score: 26.8
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 325..361
score: 16.556
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 362..401
score: 14.158
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 287..324
score: 12.862
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 43..66
e-value: 170.0
score: 3.2
coord: 187..209
e-value: 42.0
score: 8.2
coord: 164..186
e-value: 17.0
score: 11.5
coord: 115..138
e-value: 20.0
score: 10.9
NoneNo IPR availableGENE3D2.10.25.10coord: 299..324
e-value: 7.3E-7
score: 28.8
NoneNo IPR availableGENE3D2.10.25.10coord: 362..404
e-value: 2.9E-5
score: 23.3
NoneNo IPR availableGENE3D2.10.25.10coord: 325..361
e-value: 5.6E-9
score: 35.3
NoneNo IPR availableCDDcd00054EGF_CAcoord: 327..360
e-value: 5.62052E-4
score: 36.8458
NoneNo IPR availableCDDcd00054EGF_CAcoord: 292..324
e-value: 0.00737822
score: 33.379
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 368..402
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 291..340
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 327..362
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 21..74
e-value: 1.4E-4
score: 20.8
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 75..298
e-value: 2.2E-26
score: 91.8
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 20..245
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 70..128
e-value: 1.4E-6
score: 27.9
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 349..360
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 389..400
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 312..323
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 389..400

Blast
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BLAST of TCONS_00004587-protein vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.027e-21
Identity = 107/410 (26.10%), Postives = 167/410 (40.73%), Query Frame = 0 
Query:   25 LILKDNLITHFPSEYFVNFTNLTEIDLTRNLLTKPPANLSVYIPSIVNLCISENIIR---EITKDDFMGYQNVKEVNISNNIIMELESGIFSNLPKLQK--------VFIDNNSIKLLKNGVLDDAMELLWISFNGNGIEKIEKDVFKLHVKLDRLWFNNNNLSELPEGLLKN-QHLNRLEMQNNQFTDFPANAFNS----QLVKLLNNRLTTLRKEWF--LSSPDDLDVEGNPLHCDCTLYNVIQALISDNNKFDIFGNCRSPPHVKD------IYEDIQTRNKLN------CTACSVNNCQNNSTCQIINETSYNCSCSDEFQGRFCQYE-NQCLQSPCGNNGTCLLSN---DSFVCSCMNEFGGTRCHLIQLCYSDKPCENSGQCNVHKGTTMNTCTCLFGYLGSRC 400
            L L DN IT      F    +L+ I+L  N     P N + ++  +        I+       K  F+    +++V I +      E       P+  +        V   N  ++ L  G+  D  EL      GN +  + +++  L   L  +  +NN++S L      N  HL+ L +  N+    P +AFN     +++ L  N ++++ +  F  L+S   L +  NPLHCDC+L   +   +    K      C SP  + D           Q +  ++      C AC  + C+NN TC       Y C+C   ++G+ C    N C+Q+PC + GTC LS+   D F CSC   F G RC +      D  CEN+  C    G     C C   Y G  C
Sbjct:  634 LSLYDNRITTITPGAFTTLVSLSTINLLSN-----PFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELY---LEGNHLTAVPRELSALR-HLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSL-RWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCV--DGINNYVCICPPNYTGELC 1031
The following BLAST results are available for this feature:
BLAST of TCONS_00004587-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT31.027e-2126.10Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
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