TCONS_00005056-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005056-protein
Unique NameTCONS_00005056-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1708

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005056-protein ID=TCONS_00005056-protein|Name=TCONS_00005056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1708bp
MFKNLKQKIAEGVEGVSPGRQTPLQASSKPKNQNNTPSAGASNSILSNNT
PLSTKAESARSERKRISRPQTPVDSTPSTPTRTDSERRPSTSSRTPSRSS
SITDIRSDIESDAETPRKIDQLGKQELKEKYLKQEQTLKRFRQKFAEVVD
AYKTIQKDKEKLEATLTNGQDKQLRRIKELKETIQLEQEGKRHLEEVLRL
NLDEKDDQIKVLQTQVQLLKTQQYTSPDAENATKSVAEDAKALEELSSLK
AEVAELKEINQQLNNLLLAERSTHDEEQTQMYLKIEVLQQELEKREINML
NLTEEKDNLDMMVENFQNSSGNQSELMAAAEQEKENMKMIYAEKEATMKN
NFANKVQELQRVLEENENQKEIGKESFTKQQQEVNKLQNIIRQLENDKLS
MNENHGQIVFQLQNDVKDMNNQIESIKIAKDELAKEHQLAKEELLITKER
LSKAIEDTASKEGQEISRLNAENTEILTKLKENGATVASLGESIKTKEQE
VMDLSQSLKTKENEIQNLNQALQSKEADLNKARSDIDRFSEDLDSVKTDK
SNLASEFESFRNESRAEKERLNQELASAKQQLTEQLESQESQHQQKINEM
EKNRLETIDEITKQYETTLKTKEEQYREEIRSAMSEKDSSVNSLTTRLEE
MRKQELEDLEKRHASFLEETRNSYEQQILTLSQEHETSLREKSDMVAKLQ
EEGNTKHKNQGEELKTAEKKYQDLQANVTKMKEEFKKRLTKLKETHKERF
SKLDTELKETQAKYENERKEKEQLEAQQSNNVTEMSRQHVEDKNLLLQEI
ENNNGKLEKMSELIDQRDLEILNMRTELEMTCQEKDALSESVKLKETDIL
NTSLQLTESQNQQDAKQKELQELLQSKDERISYLDEEIKAMTVRKEQRDL
SFGNIQNELQSVQEEIKVLETLKAGKVKLEEERALLENEISELKAQLETK
TIELGTLHETVSNLQSEKSSLEDTLREKTRAIEDFESRVSHLEKENSKLG
EIKVELQKQVTSHEQSVNELNVQLRDKERETTRVTEDRDELRDKVKENEE
EHQMLVKSLEQRITDMIESNNENSMSLENKEQEIQHKYEEREGEYKTKLL
EMKKKAEMKIGKMKKDFSEKNRLNENKIDELNNRVVELSSQIKTNVELHE
KSQNEFADKNEGQERQIHDLENIVESLKTDIITKEELLKTSQNDSIESNI
RIEELXNIVASLKTDIITKEELLKTSQNDSIESNIRIEELTRTIEDLKSN
MKSKEQTLKQNEKTMNEKNNTRQQRIDELSGEIEELRTTLKSRNEQQSLY
VNEINELKRTIEELNTKLTANEELSKNEKTKLEESLQNKSNETENTLTSI
RNEKESLQNDVERLENELSEKSKKITELEETVENFVVGKMDALKTQREEL
EEEFQNKLKQELEDKNKQVEMTEKKLTAKVDEKDFEYSSQVKVMMKEFQN
QLANKEKEIQEAVQDAIEIAQKDERRLVAEYEEQINELQKELTLREKDMI
EFRTESEHGLRELQEEFNTLEASHQDEVVRLETDYHTRLDDLVKRHENEV
LQASKKDATVQDFEIKMREEMEDKLRATEEQHQTEMQAQEKKFKMQAKKN
KEEFRKLMNEQGANGFDGDGENKPKLTSNAVADSMNQPPEKQMVELEYLR
NILFNYMMGKQKLQMAKVLTALVHFPPSQVKQIIDKVEEQETQAPASWGG
YFSYGSKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002864XLOC_002864Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005056TCONS_00005056Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000237GRIP_dom
Vocabulary: Biological Process
TermDefinition
GO:0000042protein targeting to Golgi
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000042 protein targeting to Golgi
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 743..784
NoneNo IPR availableCOILSCoilCoilcoord: 1383..1432
NoneNo IPR availableCOILSCoilCoilcoord: 1510..1530
NoneNo IPR availableCOILSCoilCoilcoord: 177..197
NoneNo IPR availableCOILSCoilCoilcoord: 961..1062
NoneNo IPR availableCOILSCoilCoilcoord: 1560..1592
NoneNo IPR availableCOILSCoilCoilcoord: 239..269
NoneNo IPR availableCOILSCoilCoilcoord: 1438..1498
NoneNo IPR availableCOILSCoilCoilcoord: 327..347
NoneNo IPR availableCOILSCoilCoilcoord: 856..876
NoneNo IPR availableCOILSCoilCoilcoord: 124..144
NoneNo IPR availableCOILSCoilCoilcoord: 409..450
NoneNo IPR availableCOILSCoilCoilcoord: 285..319
NoneNo IPR availableCOILSCoilCoilcoord: 1114..1141
NoneNo IPR availableCOILSCoilCoilcoord: 202..222
NoneNo IPR availableCOILSCoilCoilcoord: 561..606
NoneNo IPR availableCOILSCoilCoilcoord: 707..734
NoneNo IPR availableCOILSCoilCoilcoord: 1160..1180
NoneNo IPR availableCOILSCoilCoilcoord: 664..702
NoneNo IPR availableCOILSCoilCoilcoord: 1230..1381
NoneNo IPR availableCOILSCoilCoilcoord: 494..549
NoneNo IPR availableCOILSCoilCoilcoord: 790..817
NoneNo IPR availableCOILSCoilCoilcoord: 349..404
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
NoneNo IPR availableCOILSCoilCoilcoord: 902..953
NoneNo IPR availableGENE3D1.20.5.50coord: 516..612
e-value: 8.2E-4
score: 18.6
NoneNo IPR availableGENE3D1.20.5.50coord: 1231..1324
e-value: 2.1E-5
score: 23.8
coord: 406..515
e-value: 0.15
score: 11.2
NoneNo IPR availableGENE3D1.20.5.340coord: 924..1047
e-value: 4.6E-10
score: 38.9
NoneNo IPR availableGENE3D1.20.5.50coord: 1325..1456
e-value: 0.0012
score: 17.8
coord: 1111..1230
e-value: 0.086
score: 11.8
NoneNo IPR availableSUPERFAMILY90257Myosin rod fragmentscoord: 928..1042
IPR000237GRIP domainSMARTSM007551gripcoord: 1642..1686
e-value: 2.2E-8
score: 43.9
IPR000237GRIP domainGENE3D1.10.220.60coord: 1643..1693
e-value: 3.2E-13
score: 48.9
IPR000237GRIP domainPFAMPF01465GRIPcoord: 1644..1683
e-value: 7.0E-8
score: 32.2
IPR000237GRIP domainPROSITEPS50913GRIPcoord: 1639..1686
score: 10.889
IPR000237GRIP domainSUPERFAMILY101283GRIP domaincoord: 1644..1692

Blast
[Close]
BLAST of TCONS_00005056-protein vs. Swiss-Prot (Human)
Match: GOGA4 (Golgin subfamily A member 4 OS=Homo sapiens GN=GOLGA4 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.858e-23
Identity = 82/242 (33.88%), Postives = 131/242 (54.13%), Query Frame = 0 
Query:    1 MFKNLKQKIAEGVEGVSPGRQTPLQAS--SKPKNQNNTPSAGASNSILSNNTPLSTKAESARSERKRISRPQTPVDSTPSTPTRTDSERRPSTSS--RTPSR----------SSSITDIRSDIESDAE-TPRKIDQLGKQELKEKYLKQEQTLKRFRQKFAEVVDAYKTIQKDKEKLEATLTNGQDKQLRRIKELKETIQLEQEGKRHLEEVLRLNLDEKDDQIKVLQTQVQLLKTQQYTSP 227
            MFK LKQKI+E  + +         +S  S P    +  S+      L   TP + ++   +S  +++      V+S   +P +    R  S  S  RT SR          S++  D  SD++S+AE      D L K++L ++  + E++L  +R K++E+V AY+ +Q++K+KL+  L+  QDK LRRI EL+E +Q++Q+ K+HL+E    +L+EKD  I VLQTQV LLK +    P
Sbjct:    1 MFKKLKQKISEEQQQLQQALAPAQASSNSSTPTRMRSRTSSFTEQ--LDEGTP-NRESGDTQSFAQKLQLRVPSVESLFRSPIKESLFRSSSKESLVRTSSRESLNRLDLDSSTASFDPPSDMDSEAEDLVGNSDSLNKEQLIQRLRRMERSLSSYRGKYSELVTAYQMLQREKKKLQGILSQSQDKSLRRIAELREELQMDQQAKKHLQEEFDASLEEKDQYISVLQTQVSLLKQRLRNGP 239
The following BLAST results are available for this feature:
BLAST of TCONS_00005056-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GOGA43.858e-2333.88Golgin subfamily A member 4 OS=Homo sapiens GN=GOL... [more]
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