TCONS_00005059-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005059-protein
Unique NameTCONS_00005059-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005059-protein ID=TCONS_00005059-protein|Name=TCONS_00005059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
NKTDHHLEMFEEHEDENNNNNAPLLNISMETIQNFLFGRKMKTWHDSMRS
SNDDLVQIEHMDLIDSLSATMPSQLRIDSSTIPGQTLGVFSSSWIKQGTK
MGPFTGRLVPKDEPFKRDSKYVWEVFDSNGQVSHFIDGEDELDRNWMCYI
QCARSDQEQNLEVVQHPDSSIFYYALKDVPPNQELLVWYSSAVECFLGIP
QSGPIVMDKLNNNNNNKP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002866XLOC_002866Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005059TCONS_00005059Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.170.270.10coord: 64..191
e-value: 1.9E-18
score: 66.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableSUPERFAMILY82199SET domaincoord: 72..194
IPR001214SET domainPFAMPF00856SETcoord: 132..189
e-value: 2.7E-4
score: 21.2
IPR001214SET domainPROSITEPS50280SETcoord: 73..190
score: 14.791

Blast
[Close]
BLAST of TCONS_00005059-protein vs. Swiss-Prot (Human)
Match: PRD12 (PR domain zinc finger protein 12 OS=Homo sapiens GN=PRDM12 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.492e-45
Identity = 80/187 (42.78%), Postives = 123/187 (65.78%), Query Frame = 0 
Query:   27 ISMETIQNFLFGR----------KMKTWHDSMRSS--NDDLVQIEHMDLIDSLSATMPSQLRIDSSTIPGQTLGVFSSSWIKQGTKMGPFTGRLV-PKDEPFKRDSKYVWEVFDSNGQVSHFIDGEDELDRNWMCYIQCARSDQEQNLEVVQHPDSSIFYYALKDVPPNQELLVWYSSAVECFLGIP 200
            I+ + + +FL+GR          + K+ H S +++   + L Q    ++    S  +P+++ I  S+IPG+ LG+FS +WIK GT+MGPFTGR++ P+     +++  +WEVF+ +G V +FID   E  R+WM YI+CAR++QEQNLEVVQ   +SIFY A++ +PP+QELLVWY ++   FLGIP
Sbjct:   28 ITSDILHSFLYGRWRNVLGEQLFEDKSHHASPKTAFTAEVLAQSFSGEVQKLSSLVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQ-IGTSIFYKAIEMIPPDQELLVWYGNSHNTFLGIP 213
The following BLAST results are available for this feature:
BLAST of TCONS_00005059-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRD122.492e-4542.78PR domain zinc finger protein 12 OS=Homo sapiens G... [more]
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