TCONS_00005329-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005329-protein
Unique Name	TCONS_00005329-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	635

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005329-protein ID=TCONS_00005329-protein|Name=TCONS_00005329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp
MSGGLEQKTLTAADWSIIGIYFAICLGLGVYSKFGKNKNNTAEEYFLAGR
SMMWWAVGGSLYASNMGSEHFIGLAGSGAASGIGVVAYEWHASWILLLLG
FFFVPIYIRSKIYTMPEYLRNRFQSKWMRIYLTVVSLISYITTKISVDLF
AGALFLREAIGLNIYISSAALLVFTALYTLLGGLSAVIYTDVMQCTLMVI
GALSLSILGFKEVGGLEGLWEKYPKAIGSPLNTTMLMNATDNATLGCYGS
VETYWGNMFRPYDDGEFPWPGIIFSLPITGIWYWCTDQVIVQRTLGAKNM
VQARLGTIVAGFLKLLPLFIMVMPGMISRVLYADRVACGSPEACFDFCEN
KYGCSNQAYPLLVLNILPSGLVGLMLAVMVAALMSSLSSAFNSSSTIFTM
DIWRVLRPKANDKEMLMVGRVVVVVMVGIGIAWMPNVSQGHSGQLFTYLQ
TIQSYLAPPTCAVFLVGMLWTGLTEVGALSSMLFGLVFGIVRISLDVAYP
KPHCGQVDDRPSFVKLHFMYYALIMFAACIIIMCVLSLFTRPVPLDLLGA
LTWKTINKPRFKEGMKSAEHTVSADLKLDDVRISTSNSQVGLNADQAELD
EIEEFENQTAFAKWGVRVAAGCLVFALLFLWIWYR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003033	XLOC_003033	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005329	TCONS_00005329	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter
IPR018212	Na/solute_symporter_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001734	Sodium/solute symporter	TIGRFAM	TIGR00813	TIGR00813	coord: 45..485 e-value: 1.4E-128 score: 427.5
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 45..485 e-value: 6.3E-119 score: 397.4
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 11..499 score: 72.803
IPR018212	Sodium/solute symporter, conserved site	PROSITE	PS00456	NA_SOLUT_SYMP_1	coord: 161..186
None	No IPR available	CDD	cd10329	SLC5sbd_SGLT1-like	coord: 15..555 e-value: 0.0 score: 576.449

Blast

[Close]

BLAST of TCONS_00005329-protein vs. Swiss-Prot (Human)
Match: SC5AB (Sodium/myo-inositol cotransporter 2 OS=Homo sapiens GN=SLC5A11 PE=1 SV=1)

HSP 1 Score: 519.62 bits (1337), Expect = 1.451e-177
Identity = 278/591 (47.04%), Postives = 394/591 (66.67%), Query Frame = 0

Query:    7 QKTLTAADWSIIGIYFAICLGLGVYSKFGKNKNNTAEEYFLAGRSMMWWAVGGSLYASNMGSEHFIGLAGSGAASGIGVVAYEWHASWILLLLGFFFVPIYIRSKIYTMPEYLRNRFQSKWMRIYLTVVSLISYITTKISVDLFAGALFLREAIGLNIYISSAALLVFTALYTLLGGLSAVIYTDVMQCTLMVIGALSLSILGFKEVGGLEGLWEKYPKAIGSPLNTTMLMNATDNATLGCYGSVETYWGNMFRPYDDGEFPWPGIIFSLPITGIWYWCTDQVIVQRTLGAKNMVQARLGTIVAGFLKLLPLFIMVMPGMISRVLYADRVACGSPEACFDFCENKYGCSNQAYPLLVLNILPSGLVGLMLAVMVAALMSSLSSAFNSSSTIFTMDIWRVLRPKANDKEMLMVGRVVVVVMVGIGIAWMPNVSQGHSGQLFTYLQTIQSYLAPPTCAVFLVGMLWTGLTEVGALSSMLFGLVFGIVRISLDVAYPKPHCGQVDDRPSFVK-LHFMYYALIMFAACIIIMCVLSLFTRPVPLDLLGALTWKTINKPRFKEGMKSAEHTVSADLKLDDVRISTSNSQVGLNADQ 596
            QK L   D +++ +YF   L +G++S   K K +T + YFLAG  M+WW VG SL+ASN+GS HFIGLAGSGAA+GI V AYE +  + +L+L + F+PIYI  ++ TMPEYLR RF    + I L V+ L  YI TKISVD++AGA+F+++++ L++Y++   LL  TA+YT+ GGL+AVIYTD +Q  +M+IGAL+L    F  VGG+EGL EKY  A+ S        N ++N++ G       +   +FR     + PWPG++F + I  +WYWCTDQVIVQRTL AKN+  A+ G ++A +LK+LPLFIMV PGM+SR+L+ D+VAC  PE C   C N  GCS+ AYP LVL +LP+GL GLM+AVMVAALMSSL+S FNS+STIFTMD+W  LRP+A++KE+++VGRV V+++V + I W+P V     GQLF Y+Q+I SYL PP   VF++G  W    E GA   ++ GL+ G+VR+ LD  Y +P C Q D+RP  VK +H++Y+++I+    +I +  +S FT P   +++  LTW T + P  ++        +S  L  + +  ++S+S V     Q
Sbjct:   21 QKGLEPGDIAVLVLYFLFVLAVGLWSTV-KTKRDTVKGYFLAGGDMVWWPVGASLFASNVGSGHFIGLAGSGAATGISVSAYELNGLFSVLMLAWIFLPIYIAGQVTTMPEYLRKRFGGIRIPIILAVLYLFIYIFTKISVDMYAGAIFIQQSLHLDLYLAIVGLLAITAVYTVAGGLAAVIYTDALQTLIMLIGALTLMGYSFAAVGGMEGLKEKYFLALAS--------NRSENSSCGLPREDAFH---IFRDPLTSDLPWPGVLFGMSIPSLWYWCTDQVIVQRTLAAKNLSHAKGGALMAAYLKVLPLFIMVFPGMVSRILFPDQVACADPEICQKICSNPSGCSDIAYPKLVLELLPTGLRGLMMAVMVAALMSSLTSIFNSASTIFTMDLWNHLRPRASEKELMIVGRVFVLLLVLVSILWIPVVQASQGGQLFIYIQSISSYLQPPVAVVFIMGCFWKRTNEKGAFWGLISGLLLGLVRLVLDFIYVQPRCDQPDERPVLVKSIHYLYFSMILSTVTLITVSTVSWFTEPPSKEMVSHLTWFTRHDPVVQKEQAPPAAPLSLTLSQNGMPEASSSSSVQFEMVQ 599

The following BLAST results are available for this feature:

BLAST of TCONS_00005329-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005329-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5AB	1.451e-177	47.04	Sodium/myo-inositol cotransporter 2 OS=Homo sapien...	[more]

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TCONS_00005329-protein (polypeptide) - C. hemisphaerica