TCONS_00005368-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005368-protein
Unique Name	TCONS_00005368-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	328

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005368-protein ID=TCONS_00005368-protein|Name=TCONS_00005368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MNARVLVAVVGVFVACGSNVFFLEHLVKFSPGCGHLVTFSQFFFTAAFRF
VTVTKCGTVQPVVPLREYFFAVLLYFASSLTGNLAFLFNISMPIQMIFKS
GSVMASMLLGILILKKQYSTSKYVSVAMITIGIAMCLLLSSADKPKKAEE
QGDMFSFICGLSLLLVSLFTGARLGIAQQEVVSKFGKHPKEMTCYIHLLS
LPFFIFFAKNIMNQLYIFSQAELEAVDWFPVKVPLVWIYFALNIFTQFLC
VTSVTTLTSELSALAITVILTLRKFMSLIVSIVYFRNPFTFYHWMGTLLV
FTGTLIFSEVPQRMFAAKEKPDQGKKDD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003048	XLOC_003048	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005368	TCONS_00005368	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013657	UAA

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013657	UAA transporter	PFAM	PF08449	UAA	coord: 5..309 e-value: 5.9E-89 score: 298.2
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score: 5.0
None	No IPR available	SUPERFAMILY	103481	Multidrug resistance efflux transporter EmrE	coord: 233..307

Blast

[Close]

BLAST of TCONS_00005368-protein vs. Swiss-Prot (Human)
Match: S35B4 (UDP-xylose and UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35B4 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.050e-92
Identity = 138/330 (41.82%), Postives = 211/330 (63.94%), Query Frame = 0

Query:    4 RVLVAVVGVFVACGSNVFFLEHLVKFSPGCGHLVTFSQFFFTAAFRFVTVTKCGTVQPVVPLREYFFAVLLYFASSLTGNLAFLFNISMPIQMIFKSGSVMASMLLGILILKKQYSTSKYVSVAMITIGIAMCLLLSSADKPKKAE-EQGDMFS----FICGLSLLLVSLFTGARLGIAQQEVVSKFGKHPKEMTCYIHLLSLPFFIFFAKNIMNQLYIFSQAELEAVDWFPVKVPLVWIYFALNIFTQFLCVTSVTTLTSELSALAITVILTLRKFMSLIVSIVYFRNPFTFYHWMGTLLVFTGTLIFSEVPQRMFAAKEKPDQGKKDD 328
            R  +AV  VF  C SNV FLE L +  PGCG++VTF+QF F A   F+     G   P +P+R Y   V ++F  S+  N A   NI+MP+ MIF+SGS++A+M+LGI+ILKK+YS  KY S+A++++GI +C  +S+     ++   + D F     ++ G+  L  +L   AR+GI Q+ +  +FGKH KE   Y H L LP F+F A +I +   +F+++EL  +    V +P++W Y  +NI TQ++C+  V  LT+E ++L +T+++TLRKF+SLI SI+YF+NPFT +HW+GTL VF GTL+++EV   +   K +P +  K +
Sbjct:    2 RPALAVGLVFAGCCSNVIFLELLARKHPGCGNIVTFAQFLFIAVEGFLFEADLGRKPPAIPIRYYAIMVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFKYTSIALVSVGIFICTFMSAKQVTSQSSLSENDGFQAFVWWLLGIGALTFALLMSARMGIFQETLYKRFGKHSKEALFYNHALPLPGFVFLASDIYDHAVLFNKSELYEIPVIGVTLPIMWFYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLGTLFVFIGTLMYTEVWNNLGTTKSEPQKDSKKN 331

The following BLAST results are available for this feature:

BLAST of TCONS_00005368-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005368-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S35B4	2.050e-92	41.82	UDP-xylose and UDP-N-acetylglucosamine transporter...	[more]

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TCONS_00005368-protein (polypeptide) - C. hemisphaerica