TCONS_00005412-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005412-protein
Unique Name	TCONS_00005412-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	594

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005412-protein ID=TCONS_00005412-protein|Name=TCONS_00005412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=594bp
MENLIQRKTNYLLLTLILVHQFIVIQSITFLDKSKSYAVYNTWNITEAGK
LELSFKTQTSHVMLLYVDSVRTKDTSIGGNRHNFHGSKSESFLQVTLING
AIEVTQQIDSEEHTKVIRIGENLNDLKWHRLVLTKFVGTLQVEVDHYHQI
VNYPNEVGQKFHINSRLFVGGLSEQKQLTAFGAISFMSRFFGCIKDLRYS
SGTMKTKPALELLKGQSVATGCIDKCKEENPCQNAGRCVNLFTRAGCDCF
GTGYGGAVCNTKSQSITIEEKDHIKWHVRDFRSSGTNLRMRFKAAKPDGV
LFFTKRGGNILAVEIEDGMIRVAAGKATEIPKSHLLEDNIFDAEWHSLQI
MMQSDKVLIMLDQNKPVTMTIITEKTRTNTNGPVYFGGIDSPYTFGVTSQ
SNFVGCLQQIEYNTNDVIYKVLNTISKRIETIGKIRKGCSYSSSNINVPT
EKPETTKTKEDEDEYPSNGTKETVIKEIHTREGGMGQNFIIWITAGIVIG
TIIILISAACVVHHVRLKYYRMKAQQQVPQHKDSISDDDETPMKEIEPEE
KSNASSRAGTPTLNIITRNNGKEDDEYLHMLNNVGGGDAEVSEV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003083	XLOC_003083	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005412	TCONS_00005412	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001791	Laminin_G
IPR000742	EGF-like_dom
IPR013320	ConA-like_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001791	Laminin G domain	SMART	SM00282	LamG_3	coord: 284..415 e-value: 9.5E-15 score: 65.0 coord: 47..202 e-value: 7.5E-17 score: 72.0
IPR001791	Laminin G domain	PFAM	PF02210	Laminin_G_2	coord: 55..200 e-value: 1.0E-14 score: 55.1 coord: 292..414 e-value: 6.0E-18 score: 65.5
IPR001791	Laminin G domain	PROSITE	PS50025	LAM_G_DOMAIN	coord: 263..439 score: 27.947
IPR001791	Laminin G domain	PROSITE	PS50025	LAM_G_DOMAIN	coord: 27..222 score: 28.714
None	No IPR available	GENE3D	2.60.120.200		coord: 25..227 e-value: 1.4E-23 score: 83.3
None	No IPR available	GENE3D	2.10.25.10		coord: 228..251 e-value: 3.6E-5 score: 23.3
None	No IPR available	GENE3D	2.60.120.200		coord: 252..441 e-value: 1.6E-25 score: 89.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 526..571
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 445..469
None	No IPR available	CDD	cd00110	LamG	coord: 36..199 e-value: 1.05193E-16 score: 76.688
None	No IPR available	CDD	cd00054	EGF_CA	coord: 223..259 e-value: 2.80007E-6 score: 43.7794
None	No IPR available	CDD	cd00110	LamG	coord: 265..413 e-value: 8.24607E-21 score: 88.6292
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 223..260 score: 11.87
IPR013320	Concanavalin A-like lectin/glucanase domain	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 247..416
IPR013320	Concanavalin A-like lectin/glucanase domain	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 26..214

Blast

[Close]

BLAST of TCONS_00005412-protein vs. Swiss-Prot (Human)
Match: NRX3A (Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 4.356e-22
Identity = 112/485 (23.09%), Postives = 198/485 (40.82%), Query Frame = 0

Query:   30 FLDKSKSYAVYNTWNITEAGKLELSFKTQTSHVMLLYVDSVRTKDTSIGGNRHNFHGSKSESFLQVTLINGAIEVTQQIDSEEHTKVIRIGENLNDLKWHRLVLTKFVGTLQVEVDHYHQIVNYPNEVGQK---------FHINSRLFVGGLSEQKQLTAF--GAISFMSRFFGCIKDLRYSSGTMKTKPALELLKGQSVATGCIDKCKEENPCQNAGRCVNLFTRAGCDCFGTGYGGAVCN-----------------TKSQSI-TIEEKDHIKWHVRD--FRSSGTNLRMRFKAAKPDGVLFFTKRGGNILAVEIEDGMIRV------AAGKATEIPKSHLLEDNIFDAEWHSLQIMMQSDKVLIMLDQNKPVTMTIITEKTRTNTNGPVYFGGIDSPYTF---GVTSQSNFVGCLQQIEYNTNDV---IYKVLNTISKRIETIGKIRKGCSYSSSNINVPTEKPETTKTKEDEDEYPSNGTK 471
            F+     +A Y  W+ +    L   FKT  S  +LLY+D     D                 FL ++L++G +++   +D  E T V+   + +ND  WH L++++         D    ++    E GQ            + S LF+GG+    + +A     +  M  F G I DL+Y +    ++P   LL  + V       C E  PC+N G C  L     CDC  TGYGG +C+                  + +++ T    +++ + +     +SS   + + FK  + +G++  T +  + + + ++DG + +       A +A   P +    DN     WH +++     +V I +D     T     + T   ++   Y GG  SP T    G    +NF+GCL+++ Y  ND+   + ++      +++  G++   C       NV T  P   +T E     P   TK
Sbjct:   30 FMGLPNQWARYLRWDASTRSDLSFQFKTNVSTGLLLYLDDGGVCD-----------------FLCLSLVDGRVQLRFSMDCAE-TAVLS-NKQVNDSSWHFLMVSR---------DRLRTVLMLDGE-GQSGELQPQRPYMDVVSDLFLGGVPTDIRPSALTLDGVQAMPGFKGLILDLKYGN----SEP--RLLGSRGVQMDAEGPCGER-PCENGGICFLLDGHPTCDCSTTGYGGKLCSEDVSQDPGLSHLMMSEQAREENVATFRGSEYLCYDLSQNPIQSSSDEITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDN----AWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGG--SPSTADLPGSPVSNNFMGCLKEVVYKNNDIRLELSRLARIADTKMKIYGEVVFKCE------NVATLDPINFETPEAYISLPKWNTK 466

The following BLAST results are available for this feature:

BLAST of TCONS_00005412-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005412-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NRX3A	4.356e-22	23.09	Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4	[more]

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TCONS_00005412-protein (polypeptide) - C. hemisphaerica