TCONS_00005661-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005661-protein
Unique NameTCONS_00005661-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005661-protein ID=TCONS_00005661-protein|Name=TCONS_00005661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=909bp
MTKRKVTFEEGVNEDEGGPDIKSRRFKDGEEEEEGEEIELEQEEEPIEEQ
EEEVHKEEGREQIKENNEEPQIENNENVEDVPVEATSDEITASTDETAVI
TTPIEEEVEEVEGVPVASEEATEEEIEPSKSEDDGGIIDPEEEAAIVEAA
VKATVEETPVTKPKPKRSSTRKVSRRKAPAKRAVVAPTPPASIPGPNVEN
LICGQWVEVVANPKQPSYFNCGECARKFNARESSMKHFHWCDPNAPLPKI
RKKPTNSTGRRRAGKRIGEGEKPITSKVNDTLKDLIVNVTPEQVTNQESL
RRGADSRKKYTNIEKLKIIDEVYSGEKPQDVASKYGINRSLISKWHASKD
ILIETCNQNDKKCFDTKNRRKVKYEKLYADLHQQFKAAEAAGVTISYRWI
HDTAEKMFKEYFPDATSLPQSFVSNFTKRFELTYQKKYKKAXEDDGGIID
PEEEAAIVEAAVKATVEETPVTKPKPKRSSTRKVSRRKAPAKRAVVAPTP
PASIPGPNVENLICGQWVEVVANPKQPSYFNCGECARKFNARESSMKHFH
WCDPNAPLPKIRKKPTNSTGRRRAGKRIGEGEKPITSKVNDTLKDLIVNV
TPEQVTNQESLRRGADSRKKYTNIEKLKIIDEVYSGEKPQDVASKYGINR
SLISKWHASKDILIETCNQNDKKCFDTKNRRKVKYEKLYADLHQQFKAAE
AAGVTISYRWIHDTAEKMFKEYFPDATSLPQSFVSNFTKRFELTYQKKYK
KAGGSKTTTPSSAAVAAATAAIASMEEEKSPAVRWHSDTRTIPHGTHPEQ
TSAIRTNYVSPDVPLSFAAMNYLPQQLQHHQQQQQRHPFDPRHPHPLDQR
HQQAVSGLAAVAAASAAHQQHVVVSQQHHHQQQQQQQHYRTATEPPILSE
QMRLPSVYS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003199XLOC_003199Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005661TCONS_00005661Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..67
NoneNo IPR availableGENE3D1.10.10.60coord: 376..433
e-value: 0.27
score: 11.3
coord: 687..744
e-value: 0.27
score: 11.3
NoneNo IPR availableGENE3D3.10.390.10coord: 200..287
e-value: 2.4E-4
score: 20.8
coord: 511..598
e-value: 2.4E-4
score: 20.8
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 288..375
e-value: 2.2E-7
score: 30.2
coord: 599..686
e-value: 2.2E-7
score: 30.2
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 306..358
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 617..669

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005661-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top