TCONS_00005667-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005667-protein
Unique NameTCONS_00005667-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005667-protein ID=TCONS_00005667-protein|Name=TCONS_00005667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MGFQEFSRFTNDFDYNDDRDDRHQNHSQEKQTYLQNMVMNVGECGFRCIR
TTFFVYNLLFWMVGFLVLFLAAVLHTTRNEASNDFTKISGLQGYLNGPII
LLVVGSVTLLLSFMACFGSRRNNLVLLILYLVVLIVITATELGLIILVYS
FRVPIEKSLKMDFQKTLNQYGIPSNERITTAIDALQREFHCCGNDGYGDW
VETTWWNQYDGNYSVPTSCCVIPRMKNCNKNVDKKLETIFTEGCYEDVKK
YLFENIHIIGGFAVWIVVLEVVGILLAVALVIKIRQNNRMQQTTLNGDSS
YHNLTGDIGY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003203XLOC_003203Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005667TCONS_00005667Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR008952Tetraspanin_EC2
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 258..284
score: 27.9
coord: 51..74
score: 27.84
coord: 94..120
score: 28.84
coord: 121..149
score: 27.44
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 40..296
e-value: 1.5E-44
score: 149.9
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 149..256
e-value: 1.1E-17
score: 63.6
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 149..255
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 50..281
e-value: 3.0E-43
score: 148.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Blast
[Close]
BLAST of TCONS_00005667-protein vs. Swiss-Prot (Human)
Match: TSN6 (Tetraspanin-6 OS=Homo sapiens GN=TSPAN6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.676e-28
Identity = 66/241 (27.39%), Postives = 119/241 (49.38%), Query Frame = 0 
Query:   48 CIRTTFFVYNLLFWMVGFLVLFLAAVLHTTRNEASNDFTKISGLQGYLNGPIILLVVGSVTLLLSFMACFGSRRNNLVLLILYLVVLIVITATELGLIILVYSFRVPIEKSLKMDFQKTLNQYGIPSNERITTAIDALQREFHCCGNDGYGDWVETTWWNQYDGNYSVPTSCCVIPRMKNCNKNVDKKLETIFTEGCYEDVKKYLFENIHIIGGFAVWIVVLEVVGILLAVALVIKIRQNN 288
            C ++   +Y  +FW+ G ++L   AV    +    N F+ ++  +   N P +L+  G+V +LL    CF + R +  +L LY + L ++   EL   I+ + FR  I+ S K +++K L QY    + R + A+D +Q   HCCG   Y DW +T ++++       P SCC   ++++C    D   + +  EGC+  V   +   + ++ G +  +   +++GI LA  L   I  N 
Sbjct:   16 CFKSVLLIYTFIFWITGVILL---AVGIWGKVSLENYFSLLN--EKATNVPFVLIATGTVIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNSTGDYR-SHAVDKIQNTLHCCGVTDYRDWTDTNYYSE----KGFPKSCC---KLEDCTPQRDA--DKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQ 241
The following BLAST results are available for this feature:
BLAST of TCONS_00005667-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN66.676e-2827.39Tetraspanin-6 OS=Homo sapiens GN=TSPAN6 PE=1 SV=1[more]
back to top