TCONS_00005776-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005776-protein
Unique NameTCONS_00005776-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005776-protein ID=TCONS_00005776-protein|Name=TCONS_00005776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp
MRDMSSTEKITQDLNNNNITASTKQNIKSPRKPQHRQHNNDNEVVNGGAE
NRESQRESSANQGNNVQQTMKVGKEAVAGLPNENALLELMDKSGYQLTHH
NGQRKFGPPPNWTGPIPLRGCEVFVGKLPRDCYEDELVPVFEKVGKIYEL
RLMMDYNGQNRGYAFVVYCSKRDAQKCVRTLNNYEIRKGRLLGVCQSVDN
CRLFIGGIPKKVKKEDILEEISKVTDCVVDVIVYPSATDKSKNRGFAFVE
YESHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQEVDEEIMDQVKVLYV
RNLQLSTTEETIENLFKQHADVERVKKIKDYCFVHFATREGARNALDNMQ
GKQIDEADVEVTLAKPVDKEHYRQQRAVAKLMQMANQYQQFPSVLPELAP
FNGMPPFNPQMPGLMYPPSFPVPGGQGVRPIARGRGRTAAGSRSAGGRAY
VLNGFLPQLHPILQASMAAGGGQNLTQEQMYDILPGMDLSPTNPVTLKPQ
SNRSPFQLLEEICQKNQWGTPIFTLHSTVTNDGQLFLYKVTIPALGNTYQ
PQKLCRNIDEAKMYSAEYTISQIANEASISPQLSPAPYPVRPGSIPGRNP
TTEGGAPNYPGYIISWR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003278XLOC_003278Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005776TCONS_00005776Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR006535HnRNP_R/Q_splicing_fac
IPR034435RBM46_RRM2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 202..279
e-value: 4.2E-12
score: 56.2
coord: 297..362
e-value: 1.9E-16
score: 70.6
coord: 122..195
e-value: 6.3E-19
score: 78.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 123..188
e-value: 4.5E-18
score: 64.7
coord: 203..268
e-value: 7.7E-9
score: 35.2
coord: 298..356
e-value: 5.0E-14
score: 51.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 201..283
score: 12.97
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 296..366
score: 14.795
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 121..199
score: 16.705
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 92..195
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 285..375
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 201..288
NoneNo IPR availableGENE3D3.30.70.330coord: 197..289
e-value: 1.7E-17
score: 62.9
NoneNo IPR availableGENE3D3.30.70.330coord: 6..196
e-value: 9.6E-21
score: 73.7
NoneNo IPR availableGENE3D3.30.160.20coord: 493..589
e-value: 4.6E-9
score: 35.8
NoneNo IPR availableGENE3D3.30.70.330coord: 290..372
e-value: 2.2E-18
score: 65.7
NoneNo IPR availablePFAMPF14709DND1_DSRMcoord: 504..572
e-value: 1.2E-18
score: 67.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availableCDDcd12249RRM1_hnRNPR_likecoord: 120..197
e-value: 2.79367E-46
score: 156.951
NoneNo IPR availableCDDcd12251RRM3_hnRNPR_likecoord: 295..366
e-value: 5.76184E-35
score: 125.815
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 500..573
IPR006535HnRNP R/Q splicing factorTIGRFAMTIGR01648TIGR01648coord: 70..577
e-value: 1.6E-189
score: 629.4
IPR034435Probable RNA-binding protein 46, RNA recognition motif 2CDDcd12492RRM2_RBM46coord: 199..283
e-value: 1.3672E-47
score: 160.943

Blast
[Close]
BLAST of TCONS_00005776-protein vs. Swiss-Prot (Human)
Match: A1CF (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1)

HSP 1 Score: 523.472 bits (1347), Expect = 1.657e-180
Identity = 277/529 (52.36%), Postives = 344/529 (65.03%), Query Frame = 0 
Query:   75 EAVAGLPNENALLELMDKSGYQLTHHNGQRKFG-PPPNWTGPIPLRGCEVFVGKLPRDCYEDELVPVFEKVGKIYELRLMMDYNGQNRGYAFVVYCSKRDAQKCVRTLNNYEIRKGRLLGVCQSVDNCRLFIGGIPKKVKKEDILEEISKVTDCVVDVIVYPSATDKSKNRGFAFVEYESHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQEVDEEIMDQVKVLYVRNLQLSTTEETIENLFK--QHADVERVKKIKDYCFVHFATREGARNALDNMQGKQIDEADVEVTLAKPVDKEHY-RQQRAV---AKLMQMANQYQQFPSVLPELAPFNGMPPF-NPQMPGLMYPPSFPVPGGQ----------GVRPIARGRGRTAAGSRSAGGRAYVLNGFLPQLHPILQASMAAGGGQNLT----QEQMYDILPGMDLSPTNPVTLKPQSNRSPFQLLEEICQKNQWGTPIFTLHSTVTNDG-QLFLYKVTIPALGNT------YQPQKLCRNIDEAKMYSAEYTISQIA 574
            + ++G   E AL  L+ ++GY L   NGQRK+G PPP W    P RGCE+F+GKLPRD +EDEL+P+ EK+GKIYE+R+MMD+NG NRGYAFV + +K +A+  ++ LNNYEIR GRLLGVC SVDNCRLF+GGIPK  K+E+IL E+ KVT+ VVDVIVYPSA DK+KNRGFAFVEYESHR+AAMARRKL+ G+IQLWGH IAVDWAEPE EVDE+ M  VK+LYVRNL LST+EE IE  F   +   VERVKKI+DY FVHF+ RE A  A+  + GK +D + +EVTLAKPVDK+ Y R  R       ++Q    Y     V      + G P F  PQ    +    FP   G            VR I       AAG R  GGR Y+             A    G G  +     ++++YDILPGM+L+P NPVTLKPQ  +   Q+LEEICQKN WG P++ LHS +  D  QLFLYK+TIPAL +       + P KL   +DEAK Y+AEYT+  + 
Sbjct:    9 DGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTY-SLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVREIYMNVPVGAAGVRGLGGRGYL-------------AYTGLGRGYQVKGDKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTLQTLG 523
The following BLAST results are available for this feature:
BLAST of TCONS_00005776-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
A1CF1.657e-18052.36APOBEC1 complementation factor OS=Homo sapiens GN=... [more]
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