TCONS_00005888-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005888-protein
Unique NameTCONS_00005888-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005888-protein ID=TCONS_00005888-protein|Name=TCONS_00005888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MSNSSESTKFKMVVVGAGGVGKSALTIQLIQNHFVEDYDPTIEDSYIKQV
VVDGSICILDILDTAGQEEYSAMREHYMRTGEGFLCVFAVTSLKSFQEID
NFRTQALRVKDADSVPMVLVGNKVDLPKRDVSTKDGNEKAQMFNIPYVEA
SAKTKQGVEEAFFTLVREIIADRRTRENQKKNDSKNKSKFKCTIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003360XLOC_003360Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005888TCONS_00005888Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 33..49
score: 35.71
coord: 147..169
score: 43.75
coord: 113..126
score: 56.05
coord: 50..72
score: 47.73
coord: 10..31
score: 47.93
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 12..172
e-value: 3.9E-12
score: 35.6
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 7..172
e-value: 6.7E-106
score: 367.8
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 15..195
e-value: 6.5E-4
score: 7.1
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 10..172
e-value: 1.3E-32
score: 124.3
NoneNo IPR availableGENE3D3.30.70.1390coord: 8..72
e-value: 4.3E-23
score: 80.6
NoneNo IPR availableGENE3D3.40.50.300coord: 73..170
e-value: 1.2E-27
score: 95.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..195
NoneNo IPR availableCDDcd04138H_N_K_Ras_likecoord: 22..169
e-value: 5.74888E-100
score: 288.163
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 9..162
e-value: 3.5E-39
score: 132.2
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 11..170
e-value: 2.9E-54
score: 182.9
IPR020849Small GTPase superfamily, Ras typePROSITEPS51421RAScoord: 5..195
score: 43.704
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..169

Blast
[Close]
BLAST of TCONS_00005888-protein vs. Swiss-Prot (Human)
Match: RASN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 8.383e-80
Identity = 121/188 (64.36%), Postives = 149/188 (79.26%), Query Frame = 0 
Query:    8 TKFKMVVVGAGGVGKSALTIQLIQNHFVEDYDPTIEDSYIKQVVVDGSICILDILDTAGQEEYSAMREHYMRTGEGFLCVFAVTSLKSFQEIDNFRTQALRVKDADSVPMVLVGNKVDLPKRDVSTKDGNEKAQMFNIPYVEASAKTKQGVEEAFFTLVREIIADRRTRENQKKNDSKNKSKFKCTIL 195
            T++K+VVVGAGGVGKSALTIQLIQNHFV++YDPTIEDSY KQVV+DG  C+LDILDTAGQEEYSAMR+ YMRTGEGFLCVFA+ + KSF +I+ +R Q  RVKD+D VPMVLVGNK DLP R V TK  +E A+ + IP++E SAKT+QGVE+AF+TLVREI   R  + N   + ++      C ++
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM 189
The following BLAST results are available for this feature:
BLAST of TCONS_00005888-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RASN8.383e-8064.36GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1[more]
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