TCONS_00006121-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006121-protein
Unique NameTCONS_00006121-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006121-protein ID=TCONS_00006121-protein|Name=TCONS_00006121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MKWKMKVTARHLMEKEVHIQXYEMEDESDRATFDRKGDSHTGSDSGKTST
SSPSEIQILTPFHSGMSPPTMLVSSCCDKDHGDSGSLSPASSCHHEGSSP
FFSRSSSSQDGLGPMSPESNYQRNLLRSTLSAHNYNHMVAGSLSPASSYN
QEEDMIPSPSGQHQQKSSDHHVKALSSTKRYGGILPRSGLSYLPPWYVTS
SDEIKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDL
GKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAF
YRKVDVRRHDLVHRSY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003496XLOC_003496Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006121TCONS_00006121Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 291..313
e-value: 0.14
score: 21.2
coord: 207..229
e-value: 0.17
score: 21.0
coord: 235..257
e-value: 0.0014
score: 27.9
coord: 263..285
e-value: 1.9E-4
score: 30.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 293..313
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 237..257
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 209..229
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 265..285
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 263..290
score: 16.186
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 235..262
score: 14.877
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 291..316
score: 11.468
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 207..234
score: 11.344
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 243..300
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 205..257
NoneNo IPR availableGENE3D3.30.160.60coord: 219..243
e-value: 2.3E-14
score: 52.7
NoneNo IPR availableGENE3D3.30.160.60coord: 262..276
e-value: 1.7E-15
score: 56.4
NoneNo IPR availableGENE3D3.30.160.60coord: 277..315
e-value: 8.7E-20
score: 70.4
NoneNo IPR availablePFAMPF13894zf-C2H2_4coord: 235..257
e-value: 5.3E-4
score: 20.5
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 291..309
e-value: 0.009
score: 16.3
coord: 263..285
e-value: 3.1E-6
score: 27.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 15..218
e-value: 7.6E-7
score: 28.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 244..261
e-value: 2.5E-10
score: 39.9

Blast
[Close]
BLAST of TCONS_00006121-protein vs. Swiss-Prot (Human)
Match: GFI1B (Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.348e-35
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0 
Query:  208 QCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRH 309
            +C  C K F+RSS+LS H LIH +++ Y C  C   F +KSD+ KH   H+G KP++C VCGK FSQSSN++TH R+HTG +P+SC +C K F RKVD+RRH
Sbjct:  221 ECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRH 322

HSP 2 Score: 77.0258 bits (188), Expect = 5.480e-16
Identity = 37/111 (33.33%), Postives = 58/111 (52.25%), Query Frame = 0 
Query:  204 IKKHQCEYCLKWFQRSSSLSNH-RLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHDLVH 313
            +  + C  C K F     L  H R  H  ++ + C+ C  +F     L +H   HS  + ++C +CGK F +SS + TH   H+  RPY C  CGK F++K D+++H  +H
Sbjct:  160 MDAYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDICGKTFGHAVSLEQHTHVHSQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIH 270
The following BLAST results are available for this feature:
BLAST of TCONS_00006121-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI1B6.348e-3554.90Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1... [more]
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