TCONS_00006134-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006134-protein
Unique NameTCONS_00006134-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006134-protein ID=TCONS_00006134-protein|Name=TCONS_00006134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MNPNFIRKFFDELGPEHDLNKYLFNAPSTTSPQRQEKMTPTSPSTMNDPF
NGLSAELLQALQESALQGNSSLSSMPSKSPSSHYSTSSLDFLEATKDTMM
NRLNAMEQTMGMRTSSSSSGSDYSGSLSPVDYAFFGREAMEALQRQRRER
QRKPPEGYLCHLCFCKGHYIKDCPEARPKGEGLTPYQGKKRCFGEYKCPS
CKRKWMSGNSWSNMGQMCIKCSILVYPHKQRPLDKPDGLDVSDQTKEHPQ
SLCEKCKTLGYYCRRAAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003501XLOC_003501Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006134TCONS_00006134Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027377Znf-3CxxC
IPR025829Zn_knuckle_CX2CX3GHX4C
IPR033446Zcchc24_zf-3CxxC
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..87
IPR027377Zinc-binding domainSMARTSM01328zf_3CxxC_2coord: 191..259
e-value: 8.2E-16
score: 68.5
IPR025829Zinc knuckle CX2CX3GHX4CPFAMPF13696zf-CCHC_2coord: 155..175
e-value: 1.3E-9
score: 37.5
IPR033446Zinc finger domain-containing protein 24, zinc-binding domainPFAMPF17180zf-3CxxC_2coord: 189..256
e-value: 6.0E-24
score: 84.4

Blast
[Close]
BLAST of TCONS_00006134-protein vs. Swiss-Prot (Human)
Match: ZCH24 (Zinc finger CCHC domain-containing protein 24 OS=Homo sapiens GN=ZCCHC24 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.769e-76
Identity = 101/124 (81.45%), Postives = 109/124 (87.90%), Query Frame = 0 
Query:  143 LQRQRRERQRKPPEGYLCHLCFCKGHYIKDCPEARPKGEGLTPYQGKKRCFGEYKCPSCKRKWMSGNSWSNMGQMCIKCSILVYPHKQRPLDKPDGLDVSDQTKEHPQSLCEKCKTLGYYCRRA 266
            L  + R+  ++PP  YLCHLCF KGHYIKDCP+ARPKGEGLTPYQGKKRCFGEYKCP CKRKWMSGNSW+NMGQ CIKC I VYPHKQRPL+KPDGLDVSDQ+KEHPQ LCEKCK LGYYCRR 
Sbjct:  117 LTSEARKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYYCRRV 240
The following BLAST results are available for this feature:
BLAST of TCONS_00006134-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCH248.769e-7681.45Zinc finger CCHC domain-containing protein 24 OS=H... [more]
back to top