TCONS_00006171-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006171-protein
Unique NameTCONS_00006171-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006171-protein ID=TCONS_00006171-protein|Name=TCONS_00006171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MDTTRRTYEGIKLQISNLDLEIDQNTLYLECSKYGVVLNTEIKEGSEHCP
VKAATVTYYSPGEAQTAMRSLNGKTLRKNILYVGQPPRERRPRSRSTNSF
GKYGFSTNLNESWSEVKSVSSRQQSKLLENLQHSSNGLSSSWGNDRFRPN
QSYGNSLIDFKKNITKGGCCSKCSRSGSHSHHSSGELR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003518XLOC_003518Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006171TCONS_00006171Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 12..84
e-value: 1.6E-5
score: 34.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 15..80
e-value: 3.5E-7
score: 29.9
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 7..93
NoneNo IPR availableGENE3D3.30.70.330coord: 1..94
e-value: 3.0E-11
score: 42.8
NoneNo IPR availableCDDcd00590RRM_SFcoord: 13..83
e-value: 2.18851E-11
score: 55.3889

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006171-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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