TCONS_00006428-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006428-protein
Unique NameTCONS_00006428-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006428-protein ID=TCONS_00006428-protein|Name=TCONS_00006428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1245bp
MVKKILHLIVLLLVIVHEHWCIEEDFESEFDNTHQRFTVDVPIILYGKSY
TEFHVHSHGLVILGENFDGEITSHLFDSISLISPYYYSNYNLRKVKVEIS
SQESEGITKDVKTHFSKYQSFNALQVVTVQWESYAFFDDGTPDITVILEI
ASDPQRSFSRITYKKDANDFDYESFRDLIEFNEKLIGFSAGDGKRFYKKD
SELYLGEDFYTDVLIGQGVRTTPSSGVCLYLIGEKKDSGNNEVMLPDRQV
DPDTNKLQDIDECQREDICHPQANCINLSPGYQCECKTGYIGDGKTCVNK
LDGIILEGTVSGNVNGISFSSNAKRTVIAKADLIIGTIKPLDEKLKNIFS
TLTSLHGAVSWLFADSASPNMTNGYAETKGYLESTTTIIFNNDGEYRLDI
HETFKGFVDGKVSMETRIDGKLPSIGVMIGAATISEPVDYVEGKVEMSYA
TSMKNGNTTIVDLQVERVINFKAGESSNDVGPKNLLIDVKTNSYSEESSF
NTANTASLSHRIETTTTTTTTTTPTTDTQNTTTVSTIAANNTSENSTSET
TTAPEDTTNSNTTVSTTSTTMTNTNQTISTTVQTETTNGTKESSTNATET
STTEDPKTFGNSTTEVSLTTQTTNTSNITTTNEIMTTATTITTQQQTNQT
ETNTTQAMTTATPVVTASTNNSESLGTGNFSMTTSATNQTTSATNQTTSV
TNQTTSATNQTTSAANQTTSTDDTKSTQNITTTVATLQTNGTLPLNETST
ESGNVSTATTTLTTSSTNGRTQSTMSTISDSSTTVSLTSTLSTRTEDLTT
TMRPASTSQSLTTGTGFFSISKSSDASTTTSTFSKSSTTDGVNTETSTSG
SSTTATTASNTISSTTTMMANRTENTTAPGNLVSHMPTAEGSTSQQPSEG
DSTTTTESNAIISTTSDPLGGLKPAGGGPTTTESPRVSSNAIEVTSTGFE
TTGQPPTLVPKLEVDYQPDETFYKNPKPKKYLLVAQSGTIKRIDLEGRLA
SLTYAFKSKQLNYLVDVEYDCLMENIYFTDVVDGYIGKISTNSPSHQVLF
QGLAFPEGIAVDWIGRRIYWTESKSRQISVGFLDGSKSVVLFKDDIYQPR
DILCDPNEGKIYWTDWNYFYPKIEVADMSGRNRRVLLDYRDVNQPNGLTL
DYKRNRLCWTDYKFLHVACMKLDGPKKVEIISKTVLHPFSVTNSDSILYW
TDWQSDKIQRQSIETNKRLPAIKPGLLRDGRMYGVRYVEGCPDKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003666XLOC_003666Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006428TCONS_00006428Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR000033LDLR_classB_rpt
IPR000742EGF-like_dom
IPR024731EGF_dom
IPR0110426-blade_b-propeller_TolB-like
IPR013032EGF-like_CS
IPR018097EGF_Ca-bd_CS
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR006605G2_nidogen/fibulin_G2F
IPR009017GFP
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 259..298
e-value: 4.0E-9
score: 46.3
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 1089..1133
e-value: 1.3E-9
score: 47.9
coord: 1046..1088
e-value: 9.3E-11
score: 51.7
coord: 1178..1218
e-value: 0.19
score: 20.8
coord: 1134..1177
e-value: 3.1E-6
score: 36.7
IPR000033LDLR class B repeatPFAMPF00058Ldl_recept_bcoord: 1109..1152
e-value: 1.0E-8
score: 35.4
coord: 1066..1105
e-value: 6.1E-7
score: 29.7
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1066..1108
score: 12.384
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1109..1154
score: 14.751
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1155..1197
score: 8.276
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1198..1239
score: 5.747
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1024..1065
score: 9.135
IPR000742EGF-like domainSMARTSM00181egf_5coord: 262..298
e-value: 2.2E-5
score: 33.9
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 259..298
score: 16.699
IPR024731EGF domainPFAMPF12947EGF_3coord: 266..297
e-value: 5.1E-8
score: 32.9
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 966..1238
e-value: 4.2E-32
score: 111.0
NoneNo IPR availableGENE3D2.40.155.10coord: 269..512
e-value: 2.2E-25
score: 89.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 537..622
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 799..939
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 683..727
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 743..781
NoneNo IPR availableCDDcd00054EGF_CAcoord: 259..298
e-value: 3.27354E-11
score: 59.5726
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 981..1225
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 258..299
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 284..297
IPR018097EGF-like calcium-binding, conserved sitePROSITEPS01187EGF_CAcoord: 259..284
IPR000152EGF-type aspartate/asparagine hydroxylation sitePROSITEPS00010ASX_HYDROXYLcoord: 275..286
IPR006605G2 nidogen/fibulin G2FPROSITEPS50993NIDOGEN_G2coord: 302..521
score: 11.043
IPR009017Green fluorescent proteinSUPERFAMILY54511GFP-likecoord: 307..426

Blast
[Close]
BLAST of TCONS_00006428-protein vs. Swiss-Prot (Human)
Match: NID1 (Nidogen-1 OS=Homo sapiens GN=NID1 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 4.470e-44
Identity = 96/262 (36.64%), Postives = 150/262 (57.25%), Query Frame = 0 
Query:  978 PKKYLLVAQSGTIKRIDLEGRLASLT--YAFKSKQLNYLVDVEYDCLMENIYFTDVVDGYIGKISTNS--PSHQVLFQGLAFPEGIAVDWIGRRIYWTESKSRQISVGFLDGSKSVVLFKDDIYQPRDILCDPNEGKIYWTDWNYFYPKIEVADMSGRNRRVLLDYRDVNQPNGLTLDYKRNRLCWTDYKFLHVACMKLDGPKKVEIISKTVLHPFSVTNSDSILYWTDWQSDKIQRQSIETNKRLPAIKPGLLRDGRMYGV 1235
            P  +LL AQ+G I+R+ LEG     T   AF       ++ + +DC+ + +Y+TD+ +  IG+ S +   P+  ++ Q L  PEGIAVD +GR I+WT+S   +I V  LDG++  VLF+ D+  PR I+ D   G +YWTDWN   PKIE + M G NRR+L+   D+  PNGLT D   ++LCW D       C+    P + + + + + +PF+VT+    LY+TDW+ + +    +  +K   A +P   +  R+YG+
Sbjct:  942 PGTHLLFAQTGKIERLPLEGNTMRKTEAKAFLHVPAKVIIGLAFDCVDKMVYWTDITEPSIGRASLHGGEPT-TIIRQDLGSPEGIAVDHLGRNIFWTDSNLDRIEVAKLDGTQRRVLFETDLVNPRGIVTDSVRGNLYWTDWNRDNPKIETSYMDGTNRRILVQ-DDLGLPNGLTFDAFSSQLCWVDAGTNRAECLNPSQPSRRKAL-EGLQYPFAVTSYGKNLYFTDWKMNSVVALDLAISKETDAFQP--HKQTRLYGI 1198
The following BLAST results are available for this feature:
BLAST of TCONS_00006428-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NID14.470e-4436.64Nidogen-1 OS=Homo sapiens GN=NID1 PE=1 SV=3[more]
back to top