TCONS_00006587-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006587-protein
Unique Name	TCONS_00006587-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	791

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006587-protein ID=TCONS_00006587-protein|Name=TCONS_00006587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=791bp
MNLPKLSTTIVAWLAIMVCCANSENIWIKVITTRSEFYEPGLEIARKHIM
KTNLLGKHKLQFNYVRPGTTLILFLKQLAAFNMKHFLTIGPASSRDITLI
SPLVTENSMIQYNLNGLVNDFEDVNMYPYLFNFCVLFSGYERALTTFLHH
HNWTRVAFIYISDTTKFSDTYYRSATSTEVHVRERGINVERLEKFSMFDD
STRANVPQWNRILKSTRDDNDLRIYVYFFNVLAMRYTLCELYKLGMYGPK
YVHIVFHSKWFVYYKGFARGRTNCTVEQENIVLKNFVFMNRASKRDDDIL
TVANLTVGQINSEVKASFNKKFPKHIYPNEKLDSESLYYYDALWSFAKSI
NHISKKHPRFVDNFDNWEKNTTRLSIMTDAMSNLDFEGVTAKIKFHQKGN
IRRLNSNIDFKKYDGNSSTTKTGKVNTTLMDVIGDDGNYVDRFRTEWEFP
IPLDAPKIVESTKEYGETVLIIIWLFAGAGILLCLIFLTINIYYRQVDFI
KLSSPNINNLICVGGIVTYISIFLGGLDTTIVDVEKVPLFCNISIVVLSV
GFTLTFGSLFSKTWRIYRIFTKKNSIRSVVIRDTHLFGVVMVLLLIDFAM
FVCFLAIAPYHLQAQVIDEKLIPSEDIILKTIINRCTSDHQNWFLGAMFF
YKGLLMLFGLFLAYETKNIKVESINDSKYIGFAVYNVSLFATLGSIVFTS
LYNTEHYRASYIVFCVCIIQSTTVTLCLIFGPKVWNILKDYKDPNFHNGR
PVIPGQHYTNSNSHSMKSGSQSQSDANKEMESGKSEYSSEK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003725	XLOC_003725	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006587	TCONS_00006587	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002456	GPCR_3_GABA_rcpt_B1
IPR000337	GPCR_3
IPR017978	GPCR_3_C
IPR001828	ANF_lig-bd_rcpt
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004965	G-protein coupled GABA receptor activity
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004965	G-protein coupled GABA receptor activity
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01176	GABABRECEPTR	coord: 590..615 score: 21.33 coord: 626..646 score: 28.57 coord: 560..577 score: 38.89 coord: 339..351 score: 44.76 coord: 675..698 score: 37.12 coord: 236..259 score: 32.58 coord: 469..492 score: 28.41 coord: 508..529 score: 45.04 coord: 541..560 score: 40.0
None	No IPR available	GENE3D	3.40.50.2300		coord: 142..438 e-value: 4.4E-17 score: 62.0
None	No IPR available	GENE3D	1.20.1250.20		coord: 467..737 e-value: 1.7E-6 score: 27.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 757..791
IPR002456	GPCR family 3, gamma-aminobutyric acid receptor, type B1	PRINTS	PR01177	GABAB1RECPTR	coord: 679..701 score: 30.43 coord: 335..353 score: 36.84 coord: 468..493 score: 30.77
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 549..570 score: 35.37 coord: 651..674 score: 23.96 coord: 140..156 score: 26.65
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 481..735 e-value: 2.9E-48 score: 164.6
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 476..738 score: 26.635
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 41..400 e-value: 5.9E-24 score: 84.7
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 20..405

Blast

[Close]

BLAST of TCONS_00006587-protein vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.443e-70
Identity = 198/714 (27.73%), Postives = 329/714 (46.08%), Query Frame = 0

Query:   40 PGLEIARKHIMKTNLLGKHKLQFNYVRPGTTLILFLKQLAAF------NMKHFLTIGPASSRDITLISPLVTENSMIQYNLNGLVNDFEDVNMYPYLFNFCVLFSGYERALTTFLHHHNWTRVAFIYISDTTKFSDTYYRSATSTEVHVRERGINVERLEKFSMFDDSTRANVPQWN-RILKSTRDDNDLRIYVYFFNVLAMRYTLCELYKLGMYGPKYVHIV---FHSKWFVYYKGFARGRTNCTVEQENIVLKNFVFMNRASKRDDDILTVANLTVGQINSEVKASFNKKFPKHIYPNEKLDSESLYYYDALWSFAKSIN------HISKKHPRFVDNFDNWEKNTTRLSIMTDAMSNLDFEGVTAKIKFHQKGNIRRLNSNIDFKKYDGNSSTTKTGKVNTTL--MDVIGDDGNYVDRFRTEWEFPIPLDAPKIVESTKEYGETVLIIIWLFAGAGILLCLIFLTINIYYRQVDFIKLSSPNINNLICVGGIVTYISIFLGGLDTTIVDVEKVPLFCNISIVVLSVGFTLTFGSLFSKTWRIYRIFTKKNSIRSVVIRDTHLFGVVMVLLLIDFAMFVCFLAIAPYHLQAQVIDEKLIPS-EDIILKTIINRCTSDHQNWFLGAMFFYKGLLMLFGLFLAYETKNIKVESINDSKYIGFAVYNVSLFATLGSIVFTSLYNTEHYRASYIVFCVCIIQSTTVTLCLIFGPKV 734
            P +E+A + I   +LL  +   F  +R   T     K L AF         H +  G       ++I+  +   +++Q +         D   YPY F      +    A+   L H+ W RV  +   D  +FS+            VR     V   E   + D  + +N P  + + LK     ND+RI +  F+        C  Y+  MYG KY  I+   +   W+      A   + C  +     ++ ++ ++        I T++  T  Q   E     +   P   +          Y YD +W  AK++       H S +H R  D F+  +    R  I+ +AM+  +F GVT ++ F    N  R+ + I F ++  +S   K G+ N     +++I D        R +   P P D   I+E  ++    +  I+      G+++   FL  NI  R    IK+SSP +NNLI +GG+++Y SIFL GLD + V  +     C +   +L+VG+T  FG++F+KTWR++ IF K   ++  +I+D  L  +V  +LLID  + +C+ A+ P     +    +  P+  DI ++ ++  C + H   +LG ++ YKGLLMLFG FLA+ET+N+ + ++NDSKYIG +VYNV +   +G+ V  S    +     + +  + II  +T+TLCL+F PK+
Sbjct:   79 PAVELAIEQIRNESLLRPY---FLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTL-TQDVQRFSE------------VRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKG----NDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANS-SRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHG---------YAYDGIWVIAKTLQRAMETLHASSRHQRIQD-FNYTDHTLGR--IILNAMNETNFFGVTGQVVFR---NGERMGT-IKFTQFQ-DSREVKVGEYNAVADTLEIINDT------IRFQGSEP-PKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIF-KNVKMKKKIIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAV--SFLTRDQPNVQFCIVALVIIFCSTITLCLVFVPKL 744

The following BLAST results are available for this feature:

BLAST of TCONS_00006587-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006587-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GABR2	2.443e-70	27.73	Gamma-aminobutyric acid type B receptor subunit 2 ...	[more]

You are here

TCONS_00006587-protein (polypeptide) - C. hemisphaerica