TCONS_00006611-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006611-protein
Unique Name	TCONS_00006611-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	854

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006611-protein ID=TCONS_00006611-protein|Name=TCONS_00006611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=854bp
INAMSRQLIILFFTILTTTECISNKTAIHVGALIPQLQFRDRFCFGSSIK
LAVEKINNSSFILPDHHIILHLKETHGRVGFALESLYQLLYTKPTKVAIL
GPGFSAPSKAVAELCTVFGTLQVSYSAIDPSLMSQLQYPFFFRSTPSIQS
FNKVKISFFKHFGWKRVAVLYDYTDNLFFQTTDHLSKMLIANNFTNLMIS
GFDDDVHTRMDKLQQHNVRIIVGEFSKKGARKVFCEAYKRKMYGSKYVWM
IMQGLSDTWFEDANDIDCNSTQLLIASEGYFRATRSNLRQDNVKTLFGKT
GEEIWEEIKAKKISDYYPSKTTLSSADVHPGATFAFDATVALAEALHKAE
IGGIVDFETYDYKNYETTFAIGQLLLGTTLEGVTGSMKYDMATRERLGEV
EIQQFRKGKYCTVARHYTASDVLVFDPINSKKMFPDDVIPRDHPVIVREA
ILYSLSLVSGLWAISWLGFLLALVFLFVNIKYSNIKVIKMSSPKINNIIC
FGCMLCYVAVVLYGLDSRMIDVHYIPLTCNSIAIMLSIGFTLAFGGLFSK
TFRVYRVFTASKNLTRVSIKDSKLFGLIVVLILIDILVFVTWMIVSPFQL
SLQDLDEIEDKSRDVVTIYYIHKCKCQYQMYFFASMYGYKGLLVIFGLFL
AWETRNVHLAVLNDSKYIGMAVYNVCVLGTLGIVIETAIDDKKNHVLGYV
VVALCVFLATTTTLLLIFVPKVKMLFCEDPEEAVRKPTFKFASNVVTSLS
TLGTTPLSVSSFSVVSTSSVQSKNITPRDGNKENTSSGMGRMAGYVTSGE
RKISENESSEMRRASENASNGMRKVSENVSSGASLCTQVSAIVNANVYVG
PVTD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003734	XLOC_003734	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006611	TCONS_00006611	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002456	GPCR_3_GABA_rcpt_B1
IPR017978	GPCR_3_C
IPR001828	ANF_lig-bd_rcpt
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004965	G-protein coupled GABA receptor activity
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004965	G-protein coupled GABA receptor activity
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002456	GPCR family 3, gamma-aminobutyric acid receptor, type B1	PRINTS	PR01177	GABAB1RECPTR	coord: 498..519 score: 36.36 coord: 109..126 score: 27.78 coord: 667..689 score: 34.78 coord: 242..257 score: 37.5 coord: 331..349 score: 52.63 coord: 456..481 score: 38.46
None	No IPR available	PRINTS	PR01176	GABABRECEPTR	coord: 335..347 score: 55.94 coord: 578..603 score: 26.22 coord: 104..132 score: 29.78 coord: 232..255 score: 50.76 coord: 529..548 score: 35.91 coord: 139..158 score: 35.0 coord: 202..225 score: 39.02 coord: 457..480 score: 43.18 coord: 496..517 score: 46.28 coord: 548..565 score: 34.34 coord: 663..686 score: 43.94
None	No IPR available	GENE3D	3.40.50.2300		coord: 168..351 e-value: 1.3E-16 score: 60.7
None	No IPR available	GENE3D	3.40.50.2300		coord: 22..167 e-value: 1.1E-21 score: 77.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 773..823
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 470..722 e-value: 1.2E-52 score: 179.0
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 464..726 score: 25.872
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 47..392 e-value: 1.3E-42 score: 146.1
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 23..444

Blast

[Close]

BLAST of TCONS_00006611-protein vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 3.277e-116
Identity = 242/744 (32.53%), Postives = 381/744 (51.21%), Query Frame = 0

Query:   48 SIKLAVEKINNSSFILPDHHIILHLKETHGRVGFALESLYQLLYTKPTKVAILGPGFSAPSKAVAELCTVFGTLQVSYSAIDPSLMSQLQYPFFFRSTPSIQSFNKVKISFFKHFGWKRVAVLYDYTDNLFFQTTDHLSKMLIANNFTNLMISGFDDDVHTRMDKLQQHNVRIIVGEFSKKGARKVFCEAYKRKMYGSKYVWMIMQGLSDTWFE----DANDIDCNSTQLLIASEGYFRATRSNLRQDNVKTLFGKTGEEIWEEIKAKKISDYYPSKTTLSSADVHPGATFAFDATVALAEALHKA--------EIGGIVDFETYDYKNYETTFAIGQLLLGTTLE----GVTGSMKYDMATRERLGEVEIQQFRKGKYCTVARHYTASDVLVFDPINSKKMFPDDVIPRDHPVIVREAILYSLSLVSGLWAISWLGFLLALVFLFVNIKYSNIKVIKMSSPKINNIICFGCMLCYVAVVLYGLDSRMIDVHYIPLTCNSIAIMLSIGFTLAFGGLFSKTFRVYRVFTASKNLTRVSIKDSKLFGLIVVLILIDILVFVTWMIVSPFQLSLQDLD-EIEDKSRDVVTIYYIHKCKCQYQMYFFASMYGYKGLLVIFGLFLAWETRNVHLAVLNDSKYIGMAVYNVCVLGTLGIVIETAIDDKKNHVLGYVVVALCVFLATTTTLLLIFVPKVKMLFCEDPEEAVRKPTFKFASNVVTSLSTLGTTPLSVSSFSVVSTSSVQSKN 774
            +++LA+E+I N S + P + + L L +T       L++ Y  +   P  + + G    + +  +AE    +  +Q+S++A  P L  + +YP+FFR+ PS  + N   +   KH+ WKRV  L       F +  + L+ +L   +        F +D  T + KL+ ++VRII+G+F +  A KVFC AY+  MYGSKY W+I      +W+E    +AN   C    LL A EGY       L    +KT+ GKT ++   E   K+ S   PSK        H    +A+D    +A+ L +A            I DF      NY T   +G+++L    E    GVTG + +     ER+G ++  QF+  +   V  +   +D L  + IN    F     P+D  +I+ +    SL L S L A++ LG ++A  FLF NIK  N K+IKMSSP +NN+I  G ML Y ++ L+GLD   +        C     +L++G+T AFG +F+KT+RV+ +F   K   ++ IKD KL  ++  ++LID+ + + W  V P + +++    E +   RD+     +  C+  +   +   +Y YKGLL++FG FLAWETRNV +  LNDSKYIGM+VYNV ++  +G  +     D+ N  + + +VAL +   +T TL L+FVPK+  L   +P+ A +   F+F  N     S   T+  SV+  S      +QS+N
Sbjct:   80 AVELAIEQIRNESLLRP-YFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQR-FSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKR-SGVGPSK-------FH---GYAYDGIWVIAKTLQRAMETLHASSRHQRIQDF------NY-TDHTLGRIILNAMNETNFFGVTGQVVFRNG--ERMGTIKFTQFQDSREVKVGEYNAVADTL--EIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQPN--VQFCIVALVIIFCSTITLCLVFVPKLITLRT-NPDAATQNRRFQFTQNQKKEDSKTSTSVTSVNQASTSRLEGLQSEN 795

The following BLAST results are available for this feature:

BLAST of TCONS_00006611-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006611-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GABR2	3.277e-116	32.53	Gamma-aminobutyric acid type B receptor subunit 2 ...	[more]

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TCONS_00006611-protein (polypeptide) - C. hemisphaerica