TCONS_00006695-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006695-protein
Unique NameTCONS_00006695-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1004

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006695-protein ID=TCONS_00006695-protein|Name=TCONS_00006695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1004bp
MVYKKATITAVPDTKNTDVMSKDRSCIHRTWIGWIKICRKINDFIENMFE
KHTRFITSHHSKVIIACFVFTALMAIGAVWFNALQRNEELFIPQGSQAFK
DLDRAQAKGFEDMYYRNQDIIISGFDNMFDKPEAFKEALKLHKRINASNG
YEDVCFKAKNEQGVEECLVVTSLQVFGYNESMIGDTPADIKTSLNQWLQN
PNKLFSNGRPAFLNYPNIFGTYKSNDTSASVISANAIRITYYTKYVNTWD
SDYDTVIDWEKDYFIDICKSFGTTLEHAGSSLKVNYFAGRTTADAILEST
VGDLPLFSVAFILMVAFCLLVFSRWKNLVTGHLTVAICGICVIMLGVGCG
FGLAMWIRTDFVAFTGILLFLILGIGMDNMFIIVDAMESADPDIQGEERL
VVAMKHIGGSITMTTSTDLVAFAVSAVSDFPAVKLFCIYAALSIVFAYLM
LITLFLALLTWDVHRIERGGRDICPCRAPIEQGEDVNPWLKEKEDFTRIF
MRKWGEILMTMPMKIIVCFVACGTLAAGIYGTTQITQKFEWKKTAPDGSY
FRQYAAVRDDNFPAGYGVSIILPYSGDDFGEVEIQDKIISLNEIAKNLTR
YQDPPNIINWMDQYRKWGIQASQNTTSDYFYQTLPMFLNAQKMFAPDIIF
DSTTGXNAQKMFAPDIIFDSTTGKIKAARIVMFYVNDNDATNQATAMQDL
RDELDKLTPLKNGEKDKSKEIYAATIMFIYAEQFAAVVDATILNLAICGA
TIVVITIPYLMHPGITGLVFLSFSSLLFELLGLMTAWDVSLDVIAMIIII
MAVGFSVDYTCHIAHAYMISRKDTPNKRAIDALTTMGTSVLNGGVSTFLG
MLITAFSQAEGFRIFFKMVFGIVVLGLIHGLIFLPVLLTIFVRRDLREDM
EEFIKKHDEEERSKSKRRMSHMSETQKRRQSMKYRQSTLKNIHVPTQNGD
NPNDVKADLAYVPETGKENGVDWHTHKDTAENGVNNNAFNNKDELVVTYT
VQNE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003744XLOC_003744Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006695TCONS_00006695Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp
IPR000731SSD
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 893..913
NoneNo IPR availableGENE3D1.20.1640.10coord: 666..894
e-value: 2.0E-32
score: 111.7
NoneNo IPR availableGENE3D1.20.1640.10coord: 258..472
e-value: 3.9E-36
score: 123.8
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 285..461
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 696..892
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 207..892
e-value: 6.3E-90
score: 302.3
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 303..461
score: 32.017
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 716..890
score: 9.445

Blast
BLAST of TCONS_00006695-protein vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.829e-53
Identity = 229/976 (23.46%), Postives = 415/976 (42.52%), Query Frame = 0
Query:   45 IENMFEKHTRFITSHHSKVIIACFVFTALMAIGAVWFNALQRNEELFIPQGSQAFKDLDRAQAKGFEDMY---YRNQDIII--------------SGFDNMFDKP---EAFKEALKLHKRI--------NASNGYEDVCFKAKNEQGVEECLVVTSLQVFGYNESMI----GD---TPADIKTSLNQWLQNPNKLFSN-----------GRPAFLNYPNIFGTYKSNDTSASVISANAIRITYYTKYVNTWDSDYDTVID---WEKDYFIDICKSFGTTLEHAGSSLKVNYFAGRTTADAILESTVGDLPLFSVAFILMVAFCLLVFSRWKN----LVTGHLTVAICGICVIMLGVGCGFGLAMWIRTDFVAFT-GILLFLILGIGMDNMFIIVDAMESADPDIQGE---ERLVVAMKHIGGSITMTTSTDLVAFAVSAVSDFPAVKLFCIYAALSIVFAYLMLITLFLALLTWDVHRIERGGRDICPCRAPIEQGEDVNPWLKEKEDFTRIFMRKWGEILMTMPMKIIVCFVACGTLAAGIYGTTQITQKFEWKKTAPDGSYFRQYAAVRDDNFPAGYGVSIILPYSGDDFGEVEIQDKIIS---------LNEI-----AKNLTRYQDPPNIINWMDQYRKWGIQASQNTTSDYFYQTLPMFLNAQKMFAPDIIFDSTTGXNAQK-------MFAPDIIFDSTTGKI---------KAARIVMFYVNDNDATNQATAMQDLRDELDKLTPLKN------------GEKDKSKEIYAATIMFIYAEQFAAVVDATILNLAICGATIVVITIPYLMHPGITGLVFL-SFSSLLFELLGLMTAWDVSLDVIAMIIIIMAVGFSVDYTCHIAHAYMISRKDTPNKRAIDALTTMGTSVLNG-GVSTFLGMLITAFSQAEGFRIF-FKMVFGIVVLGLIHGLIFLPVLLTIFVRRDLREDMEEFIKKHDEEERSKSKRR 918
            +  +F +   F   +   VI    VF    + G V+        +L+    SQA     R + + F+  +   +R + +II              SG D  F  P   +   + L L   I        N +   +D+C    +      C +++ L  F  + S++    GD     AD  T     ++ P  L              G P F     + G Y   + +    +A A+ IT+    VN + +D + +     WEK+ FI+  K++         +L +++ A R+  D +   +  D+    +++ +M  +  L     K+    LV   +++ I GI +++  V C  G+  +I          ++ FL+L +G+DN+FI+V A +  D  +QGE   ++L   +  +  S+ +++ ++ VAF + A+S  PAV  F ++A L++   +L+ IT F++LL  D+ R E+   DI  C    E G  V      +    R F   +  +L+   M+ IV  +  G L+  I    ++    +   + PD SY   Y         AG  V  +L   G D+   + Q+ +           + +I       N TR    P+  +W+D Y  W    S     D        F NA  +    +     T    Q+        F P  + D+   K           A  I++ +     AT   T    L+   D +  LK             G    +  ++  ++ +++ EQ+  ++D TI NL +    I ++T+  L     + ++   + + +L  + G+M  W +SL+ ++++ ++M+ G SV++  HI  A+ +S K +  +RA +AL  MG+SV +G  ++ F G+++ AF++++ F+IF F+M   +V+LG  HGLIFLPVLL+ ++   + +      K    EER K   R
Sbjct:  335 LRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQA-----RLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYNTN-CTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWL--VLGGYDDQNYN----NATALVITFP---VNNYYNDTEKLQRAQAWEKE-FINFVKNY------KNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQR-DERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQ---ASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLE-EGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPS--SWIDDYFDWVKPQSSCCRVD---NITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLS-YIGPSVNK-----AKSCATEERYKGTER 1272          
The following BLAST results are available for this feature:
BLAST of TCONS_00006695-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC11.829e-5323.46Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE... [more]
back to top