TCONS_00006772-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006772-protein
Unique NameTCONS_00006772-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006772-protein ID=TCONS_00006772-protein|Name=TCONS_00006772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MADEKEDTRECEAMRKIFVGGLPKEVSDEQFLEYFSQFGNTIDNIVMKCP
QTGSSRGFGFITYDASSAVENVFQKRPHILEGKTVDCKRAMPKEVNNASA
HAKVTKLFVGGLKEGVTEDTLKEYFESRHQESCGKIVNIELVAGKPFGFI
ETSDNDFADRLVISEGNFSIDGKQMHLQKSDSTGGRGGGRGGRGGRGRGG
GRGGFGGRGAGGRGGSRGGFGGRGGGYSNGGYGGYNQSQNDSYGQSYGQN
YNQYGQGGYGQQSYGQNYQQNYGNYDQTSQGYGNYNQSYGQGGNQGGQRW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003786XLOC_003786Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006772TCONS_00006772Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 16..88
e-value: 1.7E-18
score: 77.4
coord: 106..178
e-value: 3.4E-10
score: 49.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 107..175
e-value: 9.2E-7
score: 28.5
coord: 17..75
e-value: 2.3E-12
score: 46.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 105..182
score: 13.055
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 15..100
score: 14.965
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 101..214
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 14..95
NoneNo IPR availableGENE3D3.30.70.330coord: 2..100
e-value: 6.7E-18
score: 64.4
coord: 101..205
e-value: 5.3E-14
score: 51.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..300
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..222

Blast
[Close]
BLAST of TCONS_00006772-protein vs. Swiss-Prot (Human)
Match: ROA2 (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.236e-34
Identity = 71/196 (36.22%), Postives = 111/196 (56.63%), Query Frame = 0 
Query:    9 RECEAMRKIFVGGLPKEVSDEQFLEYFSQFGNTIDNIVMKCPQTGSSRGFGFITYDASSAVENVFQKRPHILEGKTVDCKRAMPKEVN-NASAHAKVTKLFVGGLKEGVTEDTLKEYFESRHQESCGKIVNIELVAGKP------FGFIETSDNDFADRLVISEGNFSIDGKQMHLQKSDSTGGRGGGRGGRGGRG 197
            RE E  RK+F+GGL  E ++E    Y+ Q+G   D +VM+ P +  SRGFGF+T+ + + V+     RPH ++G+ V+ KRA+ +E +    AH  V KLFVGG+KE   E  L++YF     E  GKI  IE++  +       FGF+   D+D  D++V+ + + +I+G    ++K+ S       +  R GRG
Sbjct:   15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF-----EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYH-TINGHNAEVRKALSRQEMQEVQSSRSGRG 204
The following BLAST results are available for this feature:
BLAST of TCONS_00006772-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ROA21.236e-3436.22Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
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