TCONS_00006930-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006930-protein
Unique NameTCONS_00006930-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length121

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006930-protein ID=TCONS_00006930-protein|Name=TCONS_00006930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MDIDNSLEDGNILLEATANENNNSTSPQQSSEKQVIRAPRDPNKFPTTRI
RALMRMDSDLNIASQESVYLISKATEYFVQYQAKEAYKKTAASKRKTVQK
RDLDAAITECDGMAFLEGAID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003877XLOC_003877Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006930TCONS_00006930Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 44..107
e-value: 1.6E-12
score: 47.4
NoneNo IPR availableGENE3D1.10.20.10coord: 54..121
e-value: 3.6E-17
score: 62.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 19..116

Blast
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BLAST of TCONS_00006930-protein vs. Swiss-Prot (Human)
Match: DPOE4 (DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.822e-21
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 0 
Query:   43 NKFPTTRIRALMRMDSDLNIASQESVYLISKATEYFVQYQAKEAYKKTAASKRKTVQKRDLDAAITECDGMAFLEGAID 121
            ++ P  R++AL++ D D+ +A QE+++++++A E FV+  AK+AY      KRKT+Q+RDLD AI   D  AFLEG +D
Sbjct:   39 SRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLDNAIEAVDEFAFLEGTLD 117
The following BLAST results are available for this feature:
BLAST of TCONS_00006930-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOE47.822e-2144.30DNA polymerase epsilon subunit 4 OS=Homo sapiens G... [more]
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