TCONS_00007117-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007117-protein
Unique NameTCONS_00007117-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length135

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007117-protein ID=TCONS_00007117-protein|Name=TCONS_00007117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
FKAMAGSPKKPASRAASPKKASKAMKKGGRKGGAKATKRRSKRRESYTMY
IYKVLKQVHPDVGISSKSMSIMNSFVNDIFERLAGQASRLCIQNKRMTMG
SREVQTSVRLLLPGELAKHAVSEGTKAVTKYTSSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003985XLOC_003985Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007117TCONS_00007117Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 66..86
score: 75.37
coord: 105..118
score: 89.46
coord: 47..65
score: 78.1
coord: 118..131
score: 95.85
coord: 88..105
score: 55.77
IPR000558Histone H2BSMARTSM00427h2b3coord: 37..133
e-value: 2.2E-65
score: 233.2
IPR000558Histone H2BPROSITEPS00357HISTONE_H2Bcoord: 102..124
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 7..110
e-value: 1.1E-20
score: 74.2
NoneNo IPR availableGENE3D1.10.20.10coord: 8..135
e-value: 9.8E-57
score: 190.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 20..135

Blast
[Close]
BLAST of TCONS_00007117-protein vs. Swiss-Prot (Human)
Match: H2B2E (Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 1.534e-58
Identity = 90/127 (70.87%), Postives = 105/127 (82.68%), Query Frame = 0 
Query:   10 KPASRAASPKKASK-AMKKGGRKGGAKATKRRSKRRESYTMYIYKVLKQVHPDVGISSKSMSIMNSFVNDIFERLAGQASRLCIQNKRMTMGSREVQTSVRLLLPGELAKHAVSEGTKAVTKYTSSK 135
            +PA  A +PKK SK A+ K  +K G    KR+  R+ESY++Y+YKVLKQVHPD GISSK+M IMNSFVNDIFER+AG+ASRL   NKR T+ SRE+QT+VRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    3 EPAKSAPAPKKGSKKAVTKAQKKDG---KKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
The following BLAST results are available for this feature:
BLAST of TCONS_00007117-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2B2E1.534e-5870.87Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE ... [more]
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