TCONS_00007150-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007150-protein
Unique Name	TCONS_00007150-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1279

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007150-protein ID=TCONS_00007150-protein|Name=TCONS_00007150-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1279bp
GGSINLWGVGLSTERSLYSELSSFVTQRGFLITGGLKGLSSKSVFNIMQQ
NSMKLSGSGSSMTYITGRNGGGKRQAWIRKWSWRKGSGAKIRYGVIGRAN
IAFLIDGTVAVDFGAVRRFIYNIIRLFSLSDTSININVYGSQVYRVCNFE
QFRNGDELKDVLRKMPKVLNGVRNTGAALKSILSDFSEAPTGKPNLLFTI
FQGSSKDDVVNVAADIRRFGIKTFAIGIGKTYSRKELALIAYSCSMIFQT
NTNGLSMVIQHIQANLRGIVGSVSRATGRKGHTKARDSDIIRTWQWKSYG
YRIRYGYIQRVSILILLDGTNRQHFDILEKLCFNVYRMFGAGSYISVVTY
GATQDKTLSEFRTYADGTALQNALSGLSYKGPSGSKIGAALTYASRLVMK
APRVGRKICFLVATQPSEDPVAEPAKTLVKSGVSVFAIGIGARIKSSELR
QISSYFLVSRWQTLLRSVMKIQNTMIKVIGRNPSATKEIGVQPPAGQGEQ
SKKPPLPVPQASFISSSTVQTTSDVQSRWNWWSMTSGVKPSTLGMSNVGI
LLDVSKEATHPIMLRFVAQIISMFRFSAGTTFTVISYAATQKMEFAFKSF
VTQQEVITALKAMQPNPVGRVRTGSCLKFFKQRLINRFISDNKRTPLMFL
VTQSKSSDDISKISQQIKGSGCKTIGIGVGGSYSQEEINMIGMTGQTSLS
VSTPAELPTLMGRILFSLTTIVNGPPKSTIVSLTSLVGEQGSSLAASVMN
SVMTGSVPSEAAGQPGQPNTGALCGDASGQDTGAGAAGTPEQGGATDAAD
EPPAATPGSPEAEPGLPGQPGKQDGPPGQSPTDLGSPGDSPVPGIDTPQP
APGGEKPGGGSTGAGGTDVSAGGGNAGATEAAQGMSKHDGGPGGPADGKM
TTGDSNEPVDANGSPSQTHLQPNGIPALPTNPDGSPGTGGSKPDGSADQP
QGGIETGPDGTPNLTPDGSPALNPGGSEVHRPTPAPQPAPSDTGRDGGGQ
TPVNGQQPPGPVTPGNPDGTSTVTNPDGSTTVSNPDGTPTKVDENGKVDT
SSTANLPKNADGTYNKQNDDGSQTILNPDGTPTQTNPDGTPATGGGSPAT
DSRKPDMNPDGTTTQTQHDGTVSILNPDGTPTAIGEDGRPITGAHGAPTN
PDGTITVTNQDGTQTIKNPDGTPTKLNQDGSPATGDASSNDCGCNPPGTC
TCVCNPKTKRCIRHQRASQRAFDARLEDKKTRAIKMALKSEERELKTIQN
LLKDEVDNYIENSEVLKFSRDSIHQRNKV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004009	XLOC_004009	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007150	TCONS_00007150	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002035	VWF_A

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1238..1258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 756..1191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 487..507
None	No IPR available	CDD	cd01450	vWFA_subfamily_ECM	coord: 550..692 e-value: 7.46989E-15 score: 73.0946
IPR002035	von Willebrand factor, type A	SMART	SM00327	VWA_4	coord: 98..267 e-value: 1.8E-12 score: 57.4 coord: 310..476 e-value: 3.4E-7 score: 39.9 coord: 545..719 e-value: 1.6E-11 score: 54.3
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 544..739 e-value: 7.1E-12 score: 45.1 coord: 97..287 e-value: 4.7E-16 score: 58.8
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 308..478 e-value: 3.2E-12 score: 46.2
IPR002035	von Willebrand factor, type A	PFAM	PF00092	VWA	coord: 323..454 e-value: 1.9E-10 score: 41.2 coord: 547..707 e-value: 5.0E-15 score: 56.1 coord: 100..243 e-value: 1.7E-16 score: 60.9
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 312..454 score: 12.384
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 100..262 score: 16.839
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 547..714 score: 13.652
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 547..723
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 312..477
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 98..266

Blast

[Close]

BLAST of TCONS_00007150-protein vs. Swiss-Prot (Human)
Match: CO6A3 (Collagen alpha-3(VI) chain OS=Homo sapiens GN=COL6A3 PE=1 SV=5)

HSP 1 Score: 106.301 bits (264), Expect = 7.728e-23
Identity = 158/649 (24.35%), Postives = 265/649 (40.83%), Query Frame = 0

Query:   99 ANIAFLIDGTVAV---DFGAVRRFIYNIIRLFSLSDTSININV--YGSQVYRVCNFEQFRNGDELKDVLRKMPKVLNGVRNTGAALKSILSDF------SEAPTGKPNLLFTIFQGSSKDDVVNVAADIRRFGIKTFAIGI--GKTYSRKELALIAYSCSMIFQTNTNGLSMVIQHIQANLRGIVGSVSRATGRKGHTKARDSDIIRTWQWKSYGYRIRYGYIQRVSILILLDGTNRQ---HFDILEKLCFNVYRMFGAGS---YISVVTYGATQDKTLSEFRTYADGTALQNALSGLSYKGPSGSKIGAALTYA----------SRLVMKAPRVGRKICFLVATQPSEDPVAEPAKTLVKSGVSVFAIGIGARIKS-SELRQISS----YFLVSRWQTLLRSVMKIQNTMIKVIGRNPSATKEIGVQPPAGQGEQSKKPPLPVPQASFISSSTVQTTSDVQSRWNWWSMTSGVKPSTLGMSNVGILLDVSKEATHPIMLRFVAQIISMFRFSAGTTF---TVISYAATQKMEFAFKSFVTQQEVITALKAMQPNPVGRVRTGSCLKFFKQRLINR---FISDNKRTPLMFLVTQSKSSDDISKISQQIKGSGCKTIGIGVGGSYSQEEINMIGMTGQTSLSVSTPAEL 707
            A+I FL+D +  +    F  VR F+Y++++  ++ +   +  +  +    +       +R   E+   +  M   + G   TG  L+ I+         S A  G P ++  +  G SKD +   +A+++   +  FAIG+      + KE+A    +  M    N   L      I  NL   V S S +  R G T+    DI  T Q  +              I+ L+DG+N     +F ++     N+      G+    + VV + + + +T+    TY+    +  A+  L + G   + IG AL +           SR+    P+V      L++  PS D +      L ++  SVF+ G+GA+  S +EL+ I++     F V  +    RS   +Q  ++  I         +GV     Q     KPP  V Q   ++   +    D                S LG++N   + D            F+A++I   R   G       V  YA T + EF F +  T++EVITA++ M+P     + TGS L F +  L      + +      L+ L+T  KS D+IS+ +Q++K S      IG  G+  Q E+  I     +SL V  PAE 
Sbjct:   38 ADIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNM-SYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSL----HDIVGNLVSCVHS-SVSPERAGDTETL-KDI--TAQDSA-------------DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQF-SDEPRTMFSLDTYSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQV----LVLISAGPSSDEIRYGVVALKQA--SVFSFGLGAQAASRAELQHIATDDNLVFTVPEF----RSFGDLQEKLLPYI---------VGV----AQRHIVLKPPTIVTQVIEVNKRDIVFLVD--------------GSSALGLANFNAIRD------------FIAKVIQ--RLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGA-DQAELEEIAF--DSSL-VFIPAEF 608

The following BLAST results are available for this feature:

BLAST of TCONS_00007150-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007150-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CO6A3	7.728e-23	24.35	Collagen alpha-3(VI) chain OS=Homo sapiens GN=COL6...	[more]

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TCONS_00007150-protein (polypeptide) - C. hemisphaerica