TCONS_00008097-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008097-protein
Unique NameTCONS_00008097-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008097-protein ID=TCONS_00008097-protein|Name=TCONS_00008097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MMINILKSGLQQGEEKVLSAKMFAPNDPSQGPEGYCFVQFADNISACQGM
TFLNGRDFCGKKVKVNWATNSNSGGPGNYKIIGSSVTIFVGDLDDEITDT
ELKQAFDPFGEILNAKIVRDLTTQKSKNYGFISFSNKPDAEKAIRDMHGA
MLKRRPIKTNWATRSQKSENGGQRSSELDYDEVTKESSPENCTVYVSNLP
DRVTDEAIMRHFGDFGKIIGKPRLFEGKNFCFIRYDSHDTATSAICKGNG
TELNGSILKCWWGKENAADNHNGPTSNYSSNRTQHVNVNQQNPQQQQAAM
YQQYMQQYYSNPMLQQQYYQYWMQYQQMLQQQGGGANAQQQGGAGGQYPY
QQYGGYNYNQQQGGQQQGQGGQQGGGNYPPSSNYQQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004567XLOC_004567Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008097TCONS_00008097Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 193..261
e-value: 2.2E-10
score: 50.5
coord: 87..160
e-value: 3.5E-24
score: 96.3
coord: 4..66
e-value: 5.2
score: 0.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 194..258
e-value: 1.9E-11
score: 43.5
coord: 88..158
e-value: 4.9E-21
score: 74.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 192..265
score: 12.663
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 86..164
score: 19.604
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 27..76
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 85..266
NoneNo IPR availableGENE3D3.30.70.330coord: 13..81
e-value: 8.9E-9
score: 34.9
coord: 82..181
e-value: 8.5E-26
score: 90.0
NoneNo IPR availableGENE3D3.30.70.330coord: 182..374
e-value: 1.8E-18
score: 66.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 335..386
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..185
NoneNo IPR availableCDDcd12354RRM3_TIA1_likecoord: 192..265
e-value: 5.0554E-32
score: 115.411

Blast
[Close]
BLAST of TCONS_00008097-protein vs. Swiss-Prot (Human)
Match: TIAR (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.027e-61
Identity = 107/256 (41.80%), Postives = 155/256 (60.55%), Query Frame = 0 
Query:   26 NDPSQGPEGYCFVQFADNISACQGMTFLNGRDFCGKKVKVNWATNSNSGGPGNYKIIGSSVTIFVGDLDDEITDTELKQAFDPFGEILNAKIVRDLTTQKSKNYGFISFSNKPDAEKAIRDMHGAMLKRRPIKTNWATRSQKSENGGQR--SSELDYDEVTKESSPENCTVYVSNLPDRVTDEAIMRHFGDFGKIIGKPRLFEGKNFCFIRYDSHDTATSAICKGNGTELNGSILKCWWGKENAADNHNGPTSNYS 279
            NDP      YCFV+F ++  A   +  +NGR   GK+VKVNWAT  +S      K   +   +FVGDL  EIT  ++K AF PFG+I +A++V+D+ T KSK YGF+SF NK DAE AI  M G  L  R I+TNWATR   +    Q   + +L +++V  +SSP+NCTVY   +   +TD+ + + F  FG+I+ + R+F  K + F+R+ +H++A  AI   NGT + G ++KC+WGKE+     N    +YS
Sbjct:   47 NDP------YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS----QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM-EIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYS 291
The following BLAST results are available for this feature:
BLAST of TCONS_00008097-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIAR1.027e-6141.80Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
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