TCONS_00008131-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008131-protein
Unique Name	TCONS_00008131-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	853

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008131-protein ID=TCONS_00008131-protein|Name=TCONS_00008131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp
MDTAFLTCCILLLSQCSFIFGARCNKQLIPDQNKNIKFEDLNGDIEPTKL
STEYDAAGLQPLFNLANSFMNTVQGEKLSEEFKGLNFDDITNDENRDKLI
KYETPVAIAAGFGVLFMLVMPFVGLFFCCCRCCGKCGGKRYQSQKAADRH
SCCVIMTVILFIISVMMLCGCMFMFVTNSRTHETAQDLSSTYNKAVDSVV
GVVNSTKNVLEYDIAGEFVPCLLDAIKHELGPYGIRSNFGDPLQKFISDN
VTAALDTADDMAKRVDTLKVDLDAIKAKSDDLKSDGSSLNNNLTTIRDTD
LENAKIGCGGEPQCVALIDGFKNKITMEVNFDNLPDIQSSIDEVDEAVSL
NISEQVQVGRKTLKDIPTTVQTKAQSSVDSVLSSINDIQGELDKEVNNIV
KSLDDAITTQEAKYKDYAKYFDQSNENFKYENYRYYAYIGLSALMAFIVL
LLFGGLALGICGYHREDSPSNRTKKATCGGHCLMASVGFMFIFAFFLMLF
CTIWYVLGIHLHFVCRDLKDATLLDTILSDQMNLKLEDNRPEVSVQNTLN
NCRKNLPLYKALGGETVFNITSKFNFRTLADDIDSKLDGISIDLTDQVLV
TQDVQDALNNLKTNDVSSINFTEFFAILDESITKFNLTEVANNVTAAAQS
LNATKPSTSNELLAIATKLKTLDSLTIPNIISKANAIKPDVTKVQNLAVT
LQDDASVLLDQLLSSESFIQTKTAGEVISLVSKFAALILDWLMEGTEFLV
NQALNNILKCKPISDLYDGLVSTLLCDDIVQNANGFWLGLGWCLLFFVPA
IILAVKLAKYYRRMEYDSGLDQFEHPPYNDKIPLQTYDHHPPPPYQNQGY
ANH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004583	XLOC_004583	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008131	TCONS_00008131	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008795	Prominin

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 265..285
None	No IPR available	GENE3D	1.20.1070.10		coord: 5..214 e-value: 0.0097 score: 14.4
None	No IPR available	GENE3D	1.10.287.510		coord: 256..425 e-value: 1.9E-4 score: 21.2
IPR008795	Prominin	PFAM	PF05478	Prominin	coord: 48..812 e-value: 3.7E-149 score: 498.1

Blast

[Close]

BLAST of TCONS_00008131-protein vs. Swiss-Prot (Human)
Match: PROM1 (Prominin-1 OS=Homo sapiens GN=PROM1 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.682e-60
Identity = 195/820 (23.78%), Postives = 357/820 (43.54%), Query Frame = 0

Query:   42 NGDIEPTKLSTE--YDAAGLQPLFNLANSFMNTVQGEKLSEEF----------KGLNFDDITNDENRDKLIKYETPVAIAAGFGVLFMLVMPFVGLFFCCCRCCGKCGGKRYQSQKAADR--HSCCVIMTVILFIISVMMLCGCMFMFVTNSRTHETAQDLSSTYNKAVDSVVGVVNSTKNVLEYDIAGEFVPCLLDAIKHELGPYGIRSNFGDPLQKFISDNVTAALDTADDMAKRVDTLKVDLDAIKAKSDDLKSDGSSLNNNLTTIRDTDLENAKIGCGGEPQCVALIDGFK-NKITMEVN-------FDNLPDIQSSIDEVDEAVSLNISEQVQVGRKTLKDIPTTVQTKAQSSVDSVLSSINDIQGELDKEVNNIVKSLDDAITTQEAKYKDYAKYFDQSNENFK-YENYRYYAYIGLSALMAFIVLLLFGGLALGICGYHREDSPSNRTKKATCGGHCLMASVGFMFIFAFFLMLFCTIWYVLGIHLH-FVCRDLKDATL---LDT--ILSDQMNLKLE-----DNRPEVSVQNTLNNCRKNLPLYKALGGETVFNITSKFNFRTLADDIDSKLDGISIDLTDQVLVTQDVQDALNNLKTNDVSSINFTEFFAILDESITKFNLTEVANNVTAAAQSLNATKPSTSNELLAIATKLKTLDSLTIPNIISKANAIKPDVTKVQNLAVTLQDDASVLLDQLLSSESFIQTKTAGEVISLVSKFAALILDWLMEGTEFLVNQALNNILKCKPISDLYDGLVSTLLCDDIVQNANGFWLGLGWCLLFFVPAIILAVKLAKYYRRMEYDSGLDQFEHPP 827
            N ++  T   T+  + A  +  LF L + F+  VQ     E+             +++D         K++ YE  + +    G+LF+++MP VG FFC CRCC KCGG+ +Q QK        C  I    L +I +++  G  + FV N +     +      +     +  ++N T   ++Y +A        D    +L    I S  G  +   +  N+   LD    MA  +   K  L+ + +    L    + L+++LT+++ T L ++      +P C+        N I + ++          LP + + +D V+  +  ++   VQ G ++L DIP  VQ +  + V  +   +N I  ++D     +   + D ++       +   Y  ++    + Y++Y +   + + +L+  IV+  + GL  G+CGY R  +P+ R   +  GG  LM  VG  F+F + LM+   + +V G ++   +C       L   LDT  +L++     L       ++ +++ +   ++C+KN   Y  L  +  FNI+   N       I S+L+ + ++L +  L+    +  L +     +  +N+  + A   +S    NL   A ++ A A SL     +  N L   A  +KT+    +  I    + +   V  +Q     L +  + +L  L  +++FI   T+  +I    K+   I+ +     +++       +  CKP++   D  V   LC  I+   N FW G+G   +F +PA+I AVKLAKYYRRM+ +   D  E  P
Sbjct:   33 NYELPATNYETQDSHKAGPIGILFELVHIFLYVVQPRDFPEDTLRKFLQKAYESKIDYDKPETVILGLKIVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAIS---LLVICIIISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQ--YNTTKDKAFTDLN--SINSVLGGGILDRLRPNIIPVLDEIKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVK-TSLRSSL----NDPLCLVHPSSETCNSIRLSLSQLNSNPELRQLPPVDAELDNVNNVLRTDLDGLVQQGYQSLNDIPDRVQRQTTTVVAGIKRVLNSIGSDIDNVTQRL--PIQDILSAFSVYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLGLLCGVCGYDRHATPTTRGCVSNTGGVFLMVGVGLSFLFCWILMIIVVLTFVFGANVEKLICEPYTSKELFRVLDTPYLLNEDWEYYLSGKLFNKSKMKLTFEQVYSDCKKNRGTYGTLHLQNSFNISEHLNINEHTGSISSELESLKVNL-NIFLLGAAGRKNLQDFAACGIDRMNYDSYLAQTGKSPAGVNLLSFAYDLEAKANSLPPG--NLRNSLKRDAQTIKTIHQQRVLPIEQSLSTLYQSVKILQRTGNGLLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFSISEKVASCKPVATALDTAVDVFLCSYIIDPLNLFWFGIGKATVFLLPALIFAVKLAKYYRRMDSEDVYDDVETIP 835

The following BLAST results are available for this feature:

BLAST of TCONS_00008131-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008131-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PROM1	2.682e-60	23.78	Prominin-1 OS=Homo sapiens GN=PROM1 PE=1 SV=1	[more]

You are here

TCONS_00008131-protein (polypeptide) - C. hemisphaerica