TCONS_00008151-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008151-protein
Unique Name	TCONS_00008151-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	949

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008151-protein ID=TCONS_00008151-protein|Name=TCONS_00008151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=949bp
MAFSQWRKFNFFDREILKDPVSKGNFEHLKNITPSCHASGRGIILFGDVE
GYLHQLSRELDFKSFKIYELSVSHLFQLKQHSILVTVGEDEVGVNPMIKV
WNFDKINPSTGNPTCVRMLRALAGNRAVQVSSIAVHENLSQMAVGFVDGT
VTIIKGDITNSRHSKARTIHEDKYPITGLAFKQVGNKIVLFVSTTEAVLS
FNVTSKDHKETLAEFGAGVGCSAISDVAQDNMFIIANPDALYFFHTDSMG
PCFAFEGEKKMICWFRGYLVVVSKEMKQLPRTSGTAMGMNVLSIYDIENK
FIAYSAPFPDVIAVLGEWGSLHVVTGDGKVFQLEEKDTQTKLETLFRKNM
YDMAISLAKSQHYSDGLIEIFRQYGDHLYSKGNHDGAIQQYIRTIGHLEP
SYVIRKFLDAQRIHNLTEYLQALHEKGLANTDHTTLLLNCYTKLKSVEKL
NDFIHTDNELNFDVETAIRVCRQANYFEHALELAEKFDQHEWYLKIQLED
NKDYAKALNYMKRLKFLEAEANLKSYGKLLMESVPDETTEFLKQLCTDYR
PIEVKKKAEKQDATPSTTNGTTSNIGASLVSGTINMESVTPPRRIERSHP
DDFIHIFVHQRPKLKEFLQHMVKERNDCSNVTYNTLLELYLHDASVANSN
KEYEKGAVEENKALSLLTNAQAKYDLDHAMVLSQMHNFKRGILFLYEKAK
SYQLILRYHMDHEDYDAIIEDCKNYGVKDASLWSQALAYFASKEEACKSH
IIDVLNHIDKINLMSPLHVIETLAHNSTATLGVVKDYIIRRLQQENEQIA
KDERMIRKYREDTEKMRSQIEELQTCAKIFQSSKCMICSRPLELPAVHFL
CGDSFHQACFESYAESENECPVCTPENRKVMDIIRSQENNTQLHEQFNKQ
IEKAPDGFAVVADYFGRGVFNKVTLYTDSKTQQPMLPVDPQKQRQTLFE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004590	XLOC_004590	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008151	TCONS_00008151	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR011042	6-blade_b-propeller_TolB-like
IPR000547	Clathrin_H-chain/VPS_repeat
IPR024763	VPS11_C
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING
IPR016024	ARM-type_fold
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 792..826
None	No IPR available	PIRSF	PIRSF007860	Vps11	coord: 1..928 e-value: 1.7E-298 score: 990.5
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 834..873 e-value: 6.7E-7 score: 28.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 556..577
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 833..879
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 259..567 e-value: 1.1E-36 score: 126.2 coord: 603..836 e-value: 1.8E-19 score: 69.6
IPR011042	Six-bladed beta-propeller, TolB-like	GENE3D	2.120.10.30		coord: 24..220 e-value: 1.2E-5 score: 24.2
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PFAM	PF00637	Clathrin	coord: 399..515 e-value: 1.1E-13 score: 51.1
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 580..749 score: 14.816
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 391..539 score: 30.548
IPR024763	Vacuolar protein sorting protein 11, C-terminal	PFAM	PF12451	VPS11_C	coord: 877..921 e-value: 1.3E-15 score: 57.2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 837..897 e-value: 7.8E-9 score: 34.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 835..874 score: 10.144
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 834..873 e-value: 5.60192E-5 score: 40.892
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 608..622 coord: 343..560
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 57..325

Blast

[Close]

BLAST of TCONS_00008151-protein vs. Swiss-Prot (Human)
Match: VPS11 (Vacuolar protein sorting-associated protein 11 homolog OS=Homo sapiens GN=VPS11 PE=1 SV=1)

HSP 1 Score: 996.112 bits (2574), Expect = 0.000e+0
Identity = 498/972 (51.23%), Postives = 666/972 (68.52%), Query Frame = 0

Query:    2 AFSQWRKFNFFDREILKDPVSKGNFEHLKNITPSCHA----------------SGRGIILFGDVEGYLHQLSRELDFKSFKIYELSVSHLFQLKQHSILVTVGEDEVGVNPMIKVWNFDKINPSTGNPTCVRMLRALAGNRAVQVSSIAVHENLSQMAVGFVDGTVTIIKGDITNSRHSKARTIHEDKYPITGLAFKQVGNKIVLFVSTTEAVLSFNVTSKDHKET-LAEFGAGVGCSAISDVAQDNMFIIANPDALYFFHTDSMGPCFAFEGEKKMICWFRGYLVVVSKEMKQLPRTSGTAMG-----MNVLSIYDIENKFIAYSAPFPDVIAVLGEWGSLHVVTGDGKVFQLEEKDTQTKLETLFRKNMYDMAISLAKSQHY-SDGLIEIFRQYGDHLYSKGNHDGAIQQYIRTIGHLEPSYVIRKFLDAQRIHNLTEYLQALHEKGLANTDHTTLLLNCYTKLKSVEKLNDFI--HTDNELNFDVETAIRVCRQANYFEHALELAEKFDQHEWYLKIQLEDNKDYAKALNYMKRLKFLEAEANLKSYGKLLMESVPDETTEFLKQLCTDYRPIEVKKKAEKQDATPSTTNGTTSNIGASLVSGTINMESVTPPRRIERSHPDDFIHIFVHQRPKLKEFLQHMVKERNDCSNVTYNTLLELYLHDASVANSNKEYEKGAVEENKALSLLTNAQAKYDLDHAMVLSQMHNFKRGILFLYEKAKSYQLILRYHMDHEDYDAIIEDCKNYGVKDASLWSQALAYFASKEEACKSHIIDVLNHIDKINLMSPLHVIETLAHNSTATLGVVKDYIIRRLQQENEQIAKDERMIRKYREDTEKMRSQIEELQTCAKIFQSSKCMICSRPLELPAVHFLCGDSFHQACFESYAESENECPVCTPENRKVMDIIRSQENNTQLHEQFNKQIEKAPDGFAVVADYFGRGVFNKVTLYTDSKTQQPMLPVDPQKQRQTLF 948
            A+ QWR+F FFD+E++K+P+S  N       TP+  +                SGRG ++FGD+EG +  L R L    F+ Y+L V+HL+QLKQH+IL +VGEDE G+NP++K+WN +K +   GNP C R+  A+ G     VS + VHENL+ MA+GF DG+VT+ KGDIT  RHSK + +H+  YP+TGLAF+Q G    LFV TTE V S+ V+ KD+    L   G G+ CSA+SD +QD  FI+A  + +Y +  D  GPCFAFEG K +  WFRGYL++VS++ K  P++  T+         +L+IYD+ NKFIAYS  F DV+ VL EWGSL+V+T DG+V  L+EKDTQTKLE LF+KN+++MAI+LAKSQH  SDGL +IF QYGDHLYSKGNHDGA+QQYIRTIG LEPSYVIRKFLDAQRIHNLT YLQ LH + LAN DHTTLLLNCYTKLK   KL +FI   +++E++FDVETAI+V RQA Y+ HAL LAE    HEWYLKIQLED K+Y +AL Y+ +L F +AE+N+K YGK+LM  +P++TT+ LK LCTDYRP  ++ +++++   P                               R++ ++FI IF +   +LK FL+HM + + D     Y+TLLEL L + +     +  EK   E   A+SLL + +     D A+VL QMH+F+ G+L+LYE+ K +Q I+ YHM HE Y  +I  C+ +G +D SLW QAL+YFA KEE CK ++  VL HI+  NLM PL V++TLAHNSTATL V++DY++++LQ++++QIA+DE  +R+YRE+T ++R +I+EL+   KIFQ +KC IC+  LELP+VHFLCG SFHQ CFESY+ES+ +CP C PENRKVMD+IR+QE    LH+QF  Q+  + D F+V+ADYFGRGVFNK+TL TD  T +    ++   QR  L 
Sbjct:    3 AYLQWRRFVFFDKELVKEPLS--NDGAAPGATPASGSAASKFLCLPPGITVCDSGRGSLVFGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEKRD--GGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSDPSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLIIVSRDRKVSPKSEFTSRDSQSSDKQILNIYDLCNKFIAYSTVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTKLEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKKKSESEVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQAESNMKRYGKILMHHIPEQTTQLLKGLCTDYRP-SLEGRSDRE--APGC-----------------------------RANSEEFIPIFANNPRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQVKEKLHAE---AISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVISVCERHGEQDPSLWEQALSYFARKEEDCKEYVAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQKQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGHSFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLRCSNDSFSVIADYFGRGVFNKLTLLTDPPTARLTSSLEAGLQRDLLM 935

The following BLAST results are available for this feature:

BLAST of TCONS_00008151-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008151-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VPS11	0.000e+0	51.23	Vacuolar protein sorting-associated protein 11 hom...	[more]

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TCONS_00008151-protein (polypeptide) - C. hemisphaerica