TCONS_00008525-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008525-protein
Unique NameTCONS_00008525-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008525-protein ID=TCONS_00008525-protein|Name=TCONS_00008525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
MASRSNRRGINKKKNFVKNPIHSEGYDVEIIDTKLDSESQICIICNLLMR
NPVQGIPLVEDGESCGHRFCKACLERWHKECKYPECPTCRQLIKAFPDAA
VERKILDLKIKCTNYIKGCKQNMELRDLEKHIMSCDYEEILCTLTCGKKL
MRKEMEDHVKNICKERLKDCQFKNIGCTFKGNPSSLKDHALQATNKHLTL
AIQSRDQISANQEKKIDVLQRELETSKKQIKELKCSNNEKLKTLQNDLYN
QIKLMDEGTMSDIGVLHAVNKHLSLSIQSRDLTSANQNKKIESLQQELKA
VKKSNRDLETKMTESKFINENQLKKFNNDNKLGFMVEDLNAKTDKLEDGM
DTNSQRSQFEIKIIKKLMKTQNNSVDSLEERMEQQEKTSRHLSGKLDRDK
QEFAREQERINTELRWKQKEINQLRDELTSSRMFIKLNALFVFLLFCFIV
WVYKESLDAVNVYNQSVSQSKNQILQYIDNLLSDRSKLPEPKDSKNPKDS
KNPKDLFDQRFGAFFALIVMLFFAIISVLFAIILAPFYLLFLALMELKKY
IMEYVYQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004774XLOC_004774Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008525TCONS_00008525Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR001841Znf_RING
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 209..236
NoneNo IPR availableCOILSCoilCoilcoord: 407..427
NoneNo IPR availableCOILSCoilCoilcoord: 284..311
NoneNo IPR availableCOILSCoilCoilcoord: 361..395
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 374..401
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 33..95
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 24..106
e-value: 6.5E-11
score: 41.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 151..190
e-value: 2.1E-8
score: 33.7
coord: 107..150
e-value: 6.1E-13
score: 48.3
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 42..89
e-value: 1.6E-5
score: 24.6
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 131..189
e-value: 3.4E-12
score: 46.8
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 131..178
score: 12.723
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 65..74
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 42..90
score: 12.209
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 42..93
e-value: 9.78069E-9
score: 50.9072
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 108..180

Blast
[Close]
BLAST of TCONS_00008525-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.611e-18
Identity = 61/234 (26.07%), Postives = 108/234 (46.15%), Query Frame = 0 
Query:   25 GYDVEIIDTKLDSESQICIICNLLMRNPVQGIPLVEDGESCGHRFCKACLERWHKECKYPECPTCRQL----IKAFPDAAVERKILDLKIKCTNYIKGCKQNMELRDLEKHIMSCDYEEILCTLTCGKKLMRKEMEDHVKNICKERLKDCQFKNIGCTFKGNPSSLKDHALQATNKHLTLAIQSRDQISANQEKKIDVLQRELETSKKQIKELKCSNNEKLKTLQNDLYNQIKL 254
            G+D + ++        +C +C   MR PVQ         +CGHRFC  CL+ +  E  + +CP   QL     K +PD  +E ++L L I+C +  +GC+ +  LR L+ H+ +C +  I C   C  KL R+++  H+++ C +R   C+F   GC F G   + + H      +    ++   ++  A   +++       E  K+      C+      T+Q+  Y   +L
Sbjct:    3 GFDYKFLEKP--KRRLLCPLCGKPMREPVQV-------STCGHRFCDTCLQEFLSEGVF-KCPE-DQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGE--AYESHEGMCPQE----SVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRL 217
The following BLAST results are available for this feature:
BLAST of TCONS_00008525-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF41.611e-1826.07TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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