TCONS_00008690-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008690-protein
Unique NameTCONS_00008690-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008690-protein ID=TCONS_00008690-protein|Name=TCONS_00008690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp
QNLGKMPMQKTYKRYASLGSFGVVGSTRSNLLMINQIPYLSHSKKENTTC
CVTAALESVIIWDVRRGEKIAFLKGNEDEVTSIAHSKKTSLIAVGYSNGT
IKLWDLKNNTSDVLFSGHRSAISCLCFEKSGTKLISGSTDTDIIVWDIVG
ETGLYRLKGHKGMITDCVFMTTHNVMISSSKDMLVKFWDLDNQHCFLTIV
GHKTEVWKLCLLNNETRLITGSGDAELRSYEIKEASDKESSGLLSCELLG
SILRGGKGRVISLHLEEKGQYLACHGVDSTLDLFEIVDEDDIQKALKKRR
KKIIKKQKKMPEAEQIDEDKILVEREVTDEIKKVQSFRMSQKLRSAAISY
NNTKEEIKVLSMFINNSFGYYKIDLSALPTKCQLQSLISNMGHRSDVRTV
GFNSDATLIMTASGESVKIWNRSTQKCIRTMDSDYCLCSMFVPGERHVIV
GTKTGKLQLFDISSGILLEAVDAHEEAVWSIALSPDKNGFVSGSADHEVK
FWEFDLIIDEEYSSMGKRLSISHTQTLKMTEEVLALKYSPDGRFLAVSLL
DSTVKVFFADTLKFFLSLYGHKFPVLCMDISLDSTLLITGSADKNIKIWG
LDFGDCHKSIFAHDDSITSIQVTIFLLKRYF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004885XLOC_004885Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008690TCONS_00008690Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 134..148
score: 39.29
coord: 587..601
score: 33.22
coord: 176..190
score: 35.27
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 464..503
e-value: 7.8E-6
score: 35.4
coord: 561..600
e-value: 4.8E-7
score: 39.4
coord: 108..147
e-value: 5.9E-6
score: 35.8
coord: 150..189
e-value: 5.7E-5
score: 32.5
coord: 245..285
e-value: 440.0
score: 0.3
coord: 380..421
e-value: 0.011
score: 25.0
coord: 424..461
e-value: 2.2
score: 14.8
coord: 66..105
e-value: 2.4E-5
score: 33.8
coord: 520..558
e-value: 0.036
score: 23.2
coord: 192..231
e-value: 0.078
score: 22.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 472..502
e-value: 6.4E-4
score: 20.4
coord: 567..599
e-value: 1.9E-5
score: 25.2
coord: 68..105
e-value: 0.0012
score: 19.5
coord: 154..189
e-value: 0.013
score: 16.3
coord: 115..147
e-value: 2.4E-5
score: 24.9
coord: 392..421
e-value: 0.071
score: 13.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 157..198
score: 12.113
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 390..430
score: 9.439
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 115..148
score: 13.984
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 568..609
score: 12.915
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 471..505
score: 13.416
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 73..114
score: 12.012
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 251..497
e-value: 6.4E-28
score: 97.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 498..624
e-value: 3.1E-21
score: 75.4
NoneNo IPR availableGENE3D2.40.50.140coord: 149..186
e-value: 2.4E-10
score: 39.4
coord: 108..148
e-value: 1.8E-12
score: 46.2
NoneNo IPR availableGENE3D1.10.10.670coord: 187..245
e-value: 1.6E-11
score: 43.5
NoneNo IPR availableGENE3D2.80.10.50coord: 26..107
e-value: 7.5E-12
score: 44.6
NoneNo IPR availableCDDcd00200WD40coord: 115..503
e-value: 2.88626E-38
score: 141.704
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 176..190
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 134..148
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 58..631
score: 49.329
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 329..479
coord: 253..286
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 447..602
coord: 71..216

Blast
[Close]
BLAST of TCONS_00008690-protein vs. Swiss-Prot (Human)
Match: WDR3 (WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1)

HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 309/651 (47.47%), Postives = 439/651 (67.43%), Query Frame = 0 
Query:    6 MPMQKTYKRYASLGSFGVVGSTRSNLLMINQIPYLSHSKKENTTCCVTAALESVIIWDVRRGEKIAFLKGNEDEVTSIAHSKKTSLIAVGYSNGTIKLWDLKNNTSDVLFSGHRSAISCLCFEKSGTKLISGSTDTDIIVWDIVGETGLYRLKGHKGMITDCVFMTTHNVMISSSKDMLVKFWDLDNQHCFLTIVGHKTEVWKLCLLNNETRLITGSGDAELRSYEI---KEASDKE----------SSGL---------------------LSCELLGSILRGGKGRVISLHLEEKGQYLACHGVDSTLDLFEIVDEDDIQKALKKRRKKIIKKQKKMPEAEQIDEDKILVEREVTDEIKKVQSFRMSQKLRSAAISYNNTKEEIKVLSMFINNSFGYYKIDLSALPTKCQLQ-SLISNMGHRSDVRTVGFNSDATLIMTASGESVKIWNRSTQKCIRTMDSDYCLCSMFVPGERHVIVGTKTGKLQLFDISSGILLEAVDAHEEAVWSIALSPDKNGFVSGSADHEVKFWEFDLIIDEEYSSMGKRLSISHTQTLKMTEEVLALKYSPDGRFLAVSLLDSTVKVFFADTLKFFLSLYGHKFPVLCMDISLDSTLLITGSADKNIKIWGLDFGDCHKSIFAHDDSITSIQ 621
            M + K Y RY +   FGV+GS + N++ +         + E        A E V IWD+R+GEKI  L+G + EVT +  S     +AVGY +G+I+++ L +   +V F+GH++AI+ L +++ G +L SGS DTDIIVWD++ E+GLYRLKGHK  IT  +F+   N++++S KD +VK+WDLD QHCF T+VGH+TEVW L LL+ E RLITG+ D+ELR ++I   +E  D E          S G+                     LSC   GSI+R G+ RV++L +++ G+ LACHG DS L+LF I+ + +IQK + K+ KK  KK K      + ++ ++ VE  + DEI++V + + S K++S  +  ++   E+K + +  NN    Y ++ S LPT   ++ S I+  GHRSDVRT+ F+SD   +++A+ +S+KIWNRST +CIRTM  +Y LCS FVPG+R V++GTKTGKLQL+D++SG LLE +DAH+ A+WS++LSPD+ GFV+G AD  VKFW+F+L+ DE  +S  KRLS+  T+TL++ E+VL + YSP+ + LAVSLLD TVK+F+ DTLKFFLSLYGHK PV+CMDIS D  L+ TGSAD+N+KIWGLDFGDCHKS+FAHDDS+  +Q
Sbjct:    1 MGLTKQYLRYVASAVFGVIGSQKGNIVFVTL-------RGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLLSEEKRLITGASDSELRVWDIAYLQEIEDPEEPDPKKIKGSSPGIQDTLEAEDGAFETDEAPEDRILSCRKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLELFCILSKKEIQKKMDKKMKKARKKAKLHSSKGEEEDPEVNVEMSLQDEIQRVTNIKTSAKIKSFDL-IHSPHGELKAVFLLQNNLVELYSLNPS-LPTPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAADSIKIWNRSTLQCIRTMTCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDFELVKDE--NSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQ 640
The following BLAST results are available for this feature:
BLAST of TCONS_00008690-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR30.000e+047.47WD repeat-containing protein 3 OS=Homo sapiens GN=... [more]
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