TCONS_00008751-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008751-protein
Unique NameTCONS_00008751-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008751-protein ID=TCONS_00008751-protein|Name=TCONS_00008751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
MAVPLDQYLAEDGNDQDLLTETPQEIFQKIKEEQEKYQQEKLSEPSNKKI
KVEDGEFLDEKKPVKEEEIEEGELEDGEVPDDDGAYVEVPVVNPIIKAEE
EERKKKKVALLLSYCGAKYHGMQKNPDVETIELKLLQALVKIGSIPEMHM
QYYLDDNVNQLSFQRAARTDKGVSAVRQVASLKLIANDNFIEELNQALPK
DIRSYGYERVTKTFDSKCACSGRSYEYLCPSFAFAPDKNTMDSSYRISDE
HLAFLNSLLAQYLGTHNFHNFTSGKHPSDKSANRYITKCEAKKPFECRAH
EFIAIGITGQSFMIHQIRKMIGLCIAICRGFCSKEHIEAAWGFNKLDIPR
APGLGLLLERVEYQQYNEKYGNDGLHNPLTWQDVELEVERFKIECIWQSI
MEEEIKKSPMVIWLKTLANHTYSTVGMNQPQDTGYKGQKGVFPTNVPNSN
NKRGRGTYRGHKRPWESGPRGGGRGGRGGRGGWNNNNNRGGANK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004907XLOC_004907Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008751TCONS_00008751Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020095PsdUridine_synth_TruA_C
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020095Pseudouridine synthase I, TruA, C-terminalGENE3D3.30.70.660coord: 221..366
e-value: 7.1E-39
score: 132.3
IPR001406Pseudouridine synthase I, TruATIGRFAMTIGR00071TIGR00071coord: 106..358
e-value: 2.5E-56
score: 188.9
IPR020097Pseudouridine synthase I, TruA, alpha/beta domainPFAMPF01416PseudoU_synth_1coord: 260..363
e-value: 9.5E-13
score: 48.5
NoneNo IPR availableGENE3D3.30.70.580coord: 95..220
e-value: 2.0E-31
score: 107.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..494
NoneNo IPR availableCDDcd02568PseudoU_synth_PUS1_PUS2coord: 110..363
e-value: 4.2748E-97
score: 294.906
IPR020103Pseudouridine synthase, catalytic domainSUPERFAMILY55120Pseudouridine synthasecoord: 105..377

Blast
[Close]
BLAST of TCONS_00008751-protein vs. Swiss-Prot (Human)
Match: TRUA (tRNA pseudouridine synthase A, mitochondrial OS=Homo sapiens GN=PUS1 PE=1 SV=3)

HSP 1 Score: 315.849 bits (808), Expect = 2.134e-103
Identity = 162/337 (48.07%), Postives = 220/337 (65.28%), Query Frame = 0 
Query:  100 EEERK----KKKVALLLSYCGAKYHGMQKN---PDVETIELKLLQALVKIGSIPEMHMQYYLDDNVNQLSFQRAARTDKGVSAVRQVASLKLIANDNFIEELNQALPKDIRSYGYERVTKTFDSKCACSGRSYEYLCPSFAFA-PDKNTMDSSYRISDEHLAFLNSLLAQYLGTHNFHNFTSGKHPSDKSANRYITKCEAKKPFECRAHEFIAIGITGQSFMIHQIRKMIGLCIAICRGFCSKEHIEAAWGFNKLDIPRAPGLGLLLERVEYQQYNEKYGNDGLHNPLTWQDVELEVERFKIECIWQSIMEEEIKKSPMVIWLKTLANHTYSTVGMN 428
            +EER+    K+K+ LL++Y G  YHGMQ+N      +TIE  L+ ALV+ G IPE H      +++ ++SFQR ARTDKGVSA  QV SLK+   D+ +E++N  LP  IR  G +RVT  F+SK  C  R+Y YL P+FAFA  D++  D +YR+S E L  +N LLA Y GTHNFHNFTS K P D SA RYI +   ++PF     EF  I + GQSFM+HQIRKM+GL +AI +G+  +  +E +WG  K+D+P+APGLGL+LERV +++YN+++GNDGLH PL W   E +V  FK E I+ +I+  E  +  M  WL TL  H +S   + 
Sbjct:   74 DEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENH-----GEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALT 405
The following BLAST results are available for this feature:
BLAST of TCONS_00008751-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRUA2.134e-10348.07tRNA pseudouridine synthase A, mitochondrial OS=Ho... [more]
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