TCONS_00008944-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008944-protein
Unique NameTCONS_00008944-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008944-protein ID=TCONS_00008944-protein|Name=TCONS_00008944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MSVVIKNLQKNAVLNIWLVRKDIHLLRSIMGLYSFDVGVIFLSRRRMKQL
NYKYRSKEESTDILSFPFHTALVDNGGNMNTEEKNLGDIFLCPESIKSKY
SIDDDKLRQVLVPLIAHGLCHLCGYVHETDAQWHRMNEKESEILRLFSEK
TKRNFAX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005023XLOC_005023Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008944TCONS_00008944Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002036YbeY
IPR023091MetalPrtase_cat_dom_prd
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
molecular_function GO:0004222 metalloendopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002036Endoribonuclease YbeYPFAMPF02130UPF0054coord: 33..145
e-value: 9.2E-29
score: 99.7
IPR002036Endoribonuclease YbeYTIGRFAMTIGR00043TIGR00043coord: 36..146
e-value: 7.5E-27
score: 91.6
IPR002036Endoribonuclease YbeYHAMAPMF_00009Endoribonucl_YbeYcoord: 2..153
score: 16.964
IPR023091Metalloprotease catalytic domain, predictedGENE3D3.40.390.30coord: 2..156
e-value: 7.0E-34
score: 116.1
NoneNo IPR availableSUPERFAMILY55486Metalloproteases ("zincins"), catalytic domaincoord: 4..149

Blast
[Close]
BLAST of TCONS_00008944-protein vs. Swiss-Prot (Human)
Match: YBEY (Putative ribonuclease OS=Homo sapiens GN=YBEY PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.945e-28
Identity = 57/155 (36.77%), Postives = 87/155 (56.13%), Query Frame = 0 
Query:    1 MSVVIKNLQKNAVLNIWLVRKDIHLLRSIMGLYSFDVGVIFLSRRRMKQLNYKYRSKEESTDILSFPFHTALVDNGGNMN----TEEKNLGDIFLCPESIKSKYSIDDDKLRQVLVPLIAHGLCHLCGYVHETDAQWHRMNEKESEILRLFSEKT 151
            MS+VI+NLQ+   +    +R  I ++R I+G+  FD+G+I +  + ++ +N  YR +   TD+LSFPFH  L    G        ++ NLGDIFL  E I  +   ++D    VL     HGLCHL G+ H T+A+W +M +KE  +L     +T
Sbjct:    1 MSLVIRNLQRVIPIRRAPLRSKIEIVRRILGVQKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHL--KAGEFPQPDFPDDYNLGDIFLGVEYIFHQCKENED-YNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELGRRT 152
The following BLAST results are available for this feature:
BLAST of TCONS_00008944-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YBEY2.945e-2836.77Putative ribonuclease OS=Homo sapiens GN=YBEY PE=1... [more]
back to top