TCONS_00009117-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009117-protein
Unique NameTCONS_00009117-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009117-protein ID=TCONS_00009117-protein|Name=TCONS_00009117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
CVLWKGKRNRQTSRFSSKMSGGYNFEALNETPKEYECGICSQFLKEAVEL
ACTHAFCGDCLTRCEKDKPKPSCPICRRTYNNTEKHPNHTLNRIITTSMD
VKCPLKDDGCEWTGKISDFKHHLCQYKFIKCSLEGCTEIIQRRLEGQHQK
RCKHRIIVCPHCKVKIKYNEYSAHLLVCDEVVVNCPNSGCTEQQKRKNLD
RHKLFSCLYEKVECPFKYVNPLSWRNDYECQGKFLRKDLPKHDQEKIYLH
CDQLRRKSEADSRKIRILESNKMVMELQASSHEGQIQELKGEVCNLKQTL
ELMTREKARSAELLSKQEGNIQQLKSQWEGMKRILEEQLGVTSLDSSNKK
RKRKLPPSTDNIP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005107XLOC_005107Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009117TCONS_00009117Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 251..271
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 34..81
e-value: 7.6E-7
score: 28.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 339..363
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 28..96
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 37..76
e-value: 4.5E-4
score: 29.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 37..77
score: 11.929
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 36..79
e-value: 1.7602E-4
score: 37.8104
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 174..217
e-value: 7.7E-5
score: 23.2
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 173..230
score: 9.955
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 21..94
e-value: 6.9E-15
score: 53.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 176..242
e-value: 1.9E-11
score: 43.5
coord: 137..175
e-value: 9.1E-5
score: 22.1
coord: 95..136
e-value: 3.9E-9
score: 36.1
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 52..61
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 100..157
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 157..242

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009117-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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