TCONS_00009122-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009122-protein
Unique NameTCONS_00009122-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009122-protein ID=TCONS_00009122-protein|Name=TCONS_00009122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MTSSRSNLDADSLRSINSQTPLMRGGIHIPLMNNSLEFPEYDFLFKILII
GDSGTGKSSLLIRFCDDFFSDKFISTIGVDFKIKTIALDEKLVKLQIWDS
AGQERFRTLTTTYYRGAHAIIIVYDVTDRSTFVNIGTWLAEINKNATENV
IIALVGNKCDIQERQVEYEAARAFADRLGVLFLETSAKKDINIQRLFNEL
AHELKKRLGDPLESKHNSSDFSRTVNFTGSECGEKDGYFAQCCRIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005108XLOC_005108Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009122TCONS_00009122Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR025662Sigma_54_int_dom_ATP-bd_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 182..204
score: 36.7
coord: 68..84
score: 35.86
coord: 86..108
score: 50.14
coord: 45..66
score: 49.89
coord: 148..161
score: 51.92
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 50..239
e-value: 8.2E-11
score: 51.9
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 42..207
e-value: 4.5E-28
score: 109.3
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 47..206
e-value: 7.5E-12
score: 32.1
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 45..207
e-value: 4.2E-93
score: 325.3
NoneNo IPR availableGENE3D3.30.70.1390coord: 44..108
e-value: 2.2E-27
score: 94.3
NoneNo IPR availableGENE3D3.40.50.300coord: 109..205
e-value: 3.2E-37
score: 126.1
NoneNo IPR availablePROSITEPS51419RABcoord: 40..243
score: 35.143
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 46..205
e-value: 5.7E-59
score: 198.2
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 45..199
e-value: 2.6E-26
score: 90.3
IPR025662Sigma-54 interaction domain, ATP-binding site 1PROSITEPS00675SIGMA54_INTERACT_1coord: 47..60
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 40..215

Blast
[Close]
BLAST of TCONS_00009122-protein vs. Swiss-Prot (Human)
Match: RAB1A (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 7.036e-77
Identity = 112/199 (56.28%), Postives = 147/199 (73.87%), Query Frame = 0 
Query:   39 PEYDFLFKILIIGDSGTGKSSLLIRFCDDFFSDKFISTIGVDFKIKTIALDEKLVKLQIWDSAGQERFRTLTTTYYRGAHAIIIVYDVTDRSTFVNIGTWLAEINKNATENVIIALVGNKCDIQERQ-VEYEAARAFADRLGVLFLETSAKKDINIQRLFNELAHELKKRLGDPLES----KHNSSDFSRTVNFTGSEC 232
            PEYD+LFK+L+IGDSG GKS LL+RF DD +++ +ISTIGVDFKI+TI LD K +KLQIWD+AGQERFRT+T++YYRGAH II+VYDVTD+ +F N+  WL EI++ A+ENV   LVGNKCD+  ++ V+Y  A+ FAD LG+ FLETSAK   N+++ F  +A E+KKR+G    +    K N    S  V  +G  C
Sbjct:    6 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204
The following BLAST results are available for this feature:
BLAST of TCONS_00009122-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB1A7.036e-7756.28Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
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