TCONS_00009265-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00009265-protein
Unique Name	TCONS_00009265-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	266

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00009265-protein ID=TCONS_00009265-protein|Name=TCONS_00009265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MAEHDEKVKVFMSSYVLAKILSLASKADSKEEGLLQGCSKDCKVSKITDS
YHDDDFVKTEMTIQTVTRSNKTFSFYDSFGKIDAGRFQKRYTEAQNSIGW
YVIRPRTKPFLSLREKIVIKNLLNSKLYNCERLVFLLVTTSMEENMATFN
FNYKFYMCEKDKLPVPFKCSIINLGDENTQQDKYKQHSRLLSSQQGITSS
FNEVLKDRESSKFFSNTGSSELVDNSFSLFKKTLQLMKTVKNETSQAVQD
YQKLHKEFQQLKQQKT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005183	XLOC_005183	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00009265	TCONS_00009265	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023238	FAM175

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 244..264
IPR023238	FAM175 family	PRINTS	PR02051	PROTEINF175	coord: 99..115 score: 40.9 coord: 12..30 score: 21.05 coord: 168..182 score: 26.35 coord: 32..49 score: 38.1 coord: 74..93 score: 27.86

Blast

[Close]

BLAST of TCONS_00009265-protein vs. Swiss-Prot (Human)
Match: ABRX1 (BRCA1-A complex subunit Abraxas 1 OS=Homo sapiens GN=ABRAXAS1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.160e-16
Identity = 72/264 (27.27%), Postives = 127/264 (48.11%), Query Frame = 0

Query:    6 EKVKVFMSSYVLAKILSLASKADSKEEGLLQGCSKDCKVSKITDSYHDDDFVKTEMTIQTVTRSNKTFSFYDSFGKIDAGRFQKRYTEA-QNSIGWYVIRPRTKPFLSLREKIVIKNLLNSKLYNCERLVFLLVTTS-MEENMATFNFNYKFYMCEKD---KLPVPFKCSIINLGDENTQQDKYKQHSRLLSSQQGITSSFNEVLKDRESSKFFSNTGSSELVDNSFSLFKKTLQLMKTVKNETSQAVQDYQKLHKEFQQLKQQ 264
            E     +S +VL  +       DS  EG L G  K    + ITDS  DD  V   + IQ      + FSFY+S G+++    +K  +   +N +GWY  R  +   ++ RE+++ KNL   + ++ + LVFLL+T S + E+ +T    +  Y  +K    ++P+     + NLG   ++Q  YK       S   +++ F+  ++   SSKFF   GS + V     ++    + +K++  +   + Q   KL K+  +LK++
Sbjct:    4 ESTSAVLSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTIDIQKYIPCYQLFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKNL--QEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPL----VVANLG--MSEQLGYKT-----VSGSCMSTGFSRAVQTH-SSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKRE 253

The following BLAST results are available for this feature:

BLAST of TCONS_00009265-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00009265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABRX1	5.160e-16	27.27	BRCA1-A complex subunit Abraxas 1 OS=Homo sapiens ...	[more]

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TCONS_00009265-protein (polypeptide) - C. hemisphaerica