TCONS_00009642-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009642-protein
Unique NameTCONS_00009642-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009642-protein ID=TCONS_00009642-protein|Name=TCONS_00009642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=869bp
MAQTRRRKTRSSARNAARGQESTEQENSASQSEESQESQGSQESQEFQLS
QEQEPEQAEPEQAEPEQAETESQSEQNVEKSVIENNEGEEKQEDEKENEQ
EDTNIETNIVEPEAEPLKETETENENENENIVNTQKESETFNENDVEPTE
VRSPEMALSEQTTVEGPVDPPQQESIEQETLSDKSEETETHQQEMEETDS
PPQDTMQPETPPRITEEDPETEATSPITESAPVEDTNVMEMDQESSSQEE
TNIEFNIPAPEIQITPEVQTTPEVQETVTEVQPSTEESSQGEESFQNEES
FHQEETTKIDTFEGVTPEEKEPSQKGKKKKKKRRRKRAKAEQRTVQITRD
DDDDFEVEYVSEKIDLPQWDPNYAAFQSIFETFKLEEKAVIKTEDTEKKV
ETKKPIINPSAVDDDDDDDDDEDPEKEKKEEPEKMSKKQLKKQSRMEVAT
LKQMVTRPDVVEMHDVNSKDPQILVYLKAYKNTVPVPRHWCFKRKYLAGK
RGFLKNPFELPEFIKQTGIMEMRAAMQEKEDAKTLKSKQRGKIRPKLGKI
DIDYQKLHDAFFKFQTKPKMTIHGDLYYEGKEFEVKLKEKKPGDLTDDLR
TALGMPVGPGKELIPPPWLIAMQRYGPPPSYPNLKIAGLNAPIPEGSSFG
YHAGGWGKPPVDEMGKPLYGDVFGTMNEDPNAGAETEDTIDRTPWGELES
ESESEMESEDEDEDEDQTGLITPGDAGLVTPSGMSSVGAGLETPDMIELR
KRKEIEDAMETGGDTPALYTVLNEKKTNVGASMMGSQHTYDLAPSKKAGD
GVEITLDPSELELEPSAMAAKYDDTMKEREANVNREDFSDMVAEHNAKKK
RKKPTDSGKAAKKYKEFKF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005379XLOC_005379Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009642TCONS_00009642Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006568PSP_pro-rich
IPR007180DUF382
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 117..144
NoneNo IPR availableCOILSCoilCoilcoord: 86..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 674..740
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 832..869
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 394..446
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..353
IPR006568PSP, proline-richSMARTSM00581testneucoord: 587..645
e-value: 5.1E-25
score: 99.1
IPR006568PSP, proline-richPFAMPF04046PSPcoord: 591..641
e-value: 8.6E-19
score: 67.1
IPR007180Domain of unknown function DUF382PFAMPF04037DUF382coord: 457..582
e-value: 2.8E-57
score: 192.3

Blast
[Close]
BLAST of TCONS_00009642-protein vs. Swiss-Prot (Human)
Match: SF3B2 (Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2)

HSP 1 Score: 605.52 bits (1560), Expect = 0.000e+0
Identity = 320/535 (59.81%), Postives = 401/535 (74.95%), Query Frame = 0 
Query:  354 DFEVEYVSEKIDLPQWDPNYAAFQSIFETFKLEEKAVIKTEDTEKKVETKKPIINPSAVDDDDDD----DDDEDPEKEKKEEPEKMSKKQLKKQSRMEVATLKQMVTRPDVVEMHDVNSKDPQILVYLKAYKNTVPVPRHWCFKRKYLAGKRGFLKNPFELPEFIKQTGIMEMRAAMQEKEDAKTLKSKQRGKIRPKLGKIDIDYQKLHDAFFKFQTKPKMTIHGDLYYEGKEFEVKLKEKKPGDLTDDLRTALGMPVGPGKELIPPPWLIAMQRYGPPPSYPNLKIAGLNAPIPEGSSFGYHAGGWGKPPVDEMGKPLYGDVFGTMNEDPNAGAETEDTIDRTPWG----ELESESESEMESEDEDEDEDQTGLITPGDAGLVTPSGMSSVGAGLETPDMIELRKRKEIEDAMETGGDTPALYTVLNEKKT-NVGASMMGSQHTYDLAP--SKKAG----DGVEITLDPSELELEPSAMAAKYDDTMKEREANVNREDFSDMVAEH----NAKKKRKKPTDSGKAAKKYKEFKF 869
            D E+EYV+E+ ++  ++PN+  F+ IFE FKL +    + E   +K++  +    P     +++     DD  D E+EKK E  K+SKK+L++ +R  VA LKQ+V RPDVVEMHDV ++DP++LV+LKA +N+VPVPRHWCFKRKYL GKRG  K PFELP+FIK+TGI EMR A+QEKE+ KT+KSK R K+RPK+GKIDIDYQKLHDAFFK+QTKPK+TIHGDLYYEGKEFE +LKEKKPGDL+D+LR +LGMPVGP    +PPPWLIAMQRYGPPPSYPNLKI GLN+PIPE  SFGYHAGGWGKPPVDE GKPLYGDVFGT   +     E E+ IDRTPWG      E  SE E E E +++  D+TG ITP D+GL+TP G SSV AG+ETP++IELRK+K IE+AM+ G +TP L+TVL EK+T  VG +MMGS H YD++   S+K       GVE+ L P ELEL+P AM  KY++ ++E++A V +EDFSDMVAEH      KK++ +P DS   +KKYKEFKF
Sbjct:  366 DVEIEYVTEEPEI--YEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPKKKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTE-EEEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKK-IEEAMD-GSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 895
The following BLAST results are available for this feature:
BLAST of TCONS_00009642-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3B20.000e+059.81Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF... [more]
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