TCONS_00009843-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009843-protein
Unique NameTCONS_00009843-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1933

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009843-protein ID=TCONS_00009843-protein|Name=TCONS_00009843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1933bp
MSTMKLPLLLFYAAGTLAAPFLVLDEGLPKSTDGLLGNCQTSRFNQGKAY
SYDYAGETVSNIEGASIQSTGMRIKSRVLITPLQECKFAMSLSNTELSLK
SKNQDFTKSRDSNLLAGDLQKYELLFTMNGNKIETLVAHDNEPTNILNIK
RGILSILQFDQDQTTEKDVNGICSSTIKKEPDNTFTETKKLHECKERAQN
EYGVQAASFQTESAIKPLDSTSKCNFVMKGNIIKSVECNEKHIFRPFSAG
YESASGAMTFVKQSMRFNGPTAALRINLNAGSYNKQSTLVFDHEKEELKS
TKALSATAESIMESLVSKKSLSAQQNSAHEFTALVMALRKMNQKAMTPIW
DQYFECKSCSEDLKSVYRQYLLDAIAYCGTSTCVSFVRDVIVNGEMQGER
VNMFLQSIALVADTSKDMIRDVLEIVKKQPTRQAYLTLGTLMNRHCTKTP
KDCDFAQNNPVSIAESYLEKKLGKNCDGQENYERVEELLMVLKAMGNARR
PARVRSTLLKCAENSKHANITHSVFHAFKSMPCSDNLFTDEILKFIKNQE
IDPEKRIHAFRAAVSCPSEYVLERLVATLEKEPSKQVASYMWTTFSNIME
SNSVEQANARELLKKITKTIPLKVVDLPHHQYSKFFEKTLGVQDAGVTAE
GQLIFHPDGYLPRTAMFNLKGNLLGNSIDLFESMVYVEGAEDMIGELVGI
DGLFSKDFLYEVFNSSMTMDKLKEMYYNHQDQKREVKMTGRMNKIHNQVN
MKPTKPTAHINIKVMGQEVRVFSYDDLYWLIDEIDNMNVIQLLTNAATGG
HKTFTKSLMFLELTHVVPTGMGLPLKMKLTGSTVASLELDGKFDIRNMFW
GPGSIHVKGSIKPSAVVELSGQMGIDSVYASSGIFVNTSMFTSNELKGNV
IYQNGKILKINLDTPEEPITLFNVSSTPFMYLNEESNLIQGTERRISPDY
CLKSKMIGYGICTSVRIPFAFREYEAPYFPLSGPAHYGVKLVRGDEKLTT
YQFLVKMEKKGKETLGKIEFSTPGAYYDRTVGGNMKYSDVWGVKNLVFST
EKQGKAGSIQLNYNPTTKRAFIEGRNNFFTPKEIVSRVEAYQSGSPISQQ
YGIKANFNYDWYTFSHETKVMKKESGYMFQTTTNYYPKKSIVGVVEYMTK
ENKLILRFDADQIKQAFEFSGQMKKEASQNGITFTATHLTSGKSATLYMG
VNNQADVKELIIEANVLGKKASSVIGYYNKNGMQSYEHIIKVNGKSGRFV
ASLTNQETTKRVDMSFLLNGQKQGESFAVLTNTAQEKSLYISASAMDKDM
NAKAGYYARAGKQTVRAEANIDGNEGQIYFDLNSAEGYRYTLGGIAGQYS
AGFRGAYTENKGQKVCMAMYYGMTNSEEEPVTACFGYDRIATAYFHKRAF
AEVEMKKMDKSFELTADMKQEGKTTSVITAFNYNGKTMLRESIQFTYAGV
MNTELHYTLTVGKYNGGFNLFTRSKKTTGQVGIEGFYMNQNVKLVNDWSV
SNVDQGMDRSFTTTVFYNGKVLPVSTTFNVYTEKATVGPSFRLNIGSASM
VYTTMINYGNGKYGMSDEIAIESNSKSLIKLFRRADLTMKGNRKEVNVKF
GTIIADKTYEYGWEAAMVNQGTASKSAIDLIFRLQYSTTRKSVITFTVAD
NKKAASLYINVEYFPTKSVSHSIIFTKKTQELAFDFEFLPTMHSTFNVRF
DMNPAAEYKKITTDFGLKWNKFRKMASLTQLFNNNKKMFETITKFGANNF
GVKYEKKARKLTLGVRVMKHNAKFITIFKKKMTQFQMIKNGKVLANVGVG
YTKAGKKWTVSVLNKGRSVASLTGNYNRFIKESTLTMKVGRKSFGVSGRM
DRSMVSGAIIYNRKDIAKIVAKKVKSTVSLKFMAPTMKKDITFAAELAXQ
PSMFDSIWTLQLNTRKSPQISVSNGTNSGKWHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005505XLOC_005505Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009843TCONS_00009843Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001747Lipid_transpt_N
IPR015255Vitellinogen_open_b-sht
IPR009454Lipid_transpt_open_b-sht
IPR015816Vitellinogen_b-sht_N
IPR015817Vitellinogen_open_b-sht_sub1
IPR015819Lipid_transp_b-sht_shell
IPR011030Vitellinogen_superhlx
Vocabulary: Biological Process
TermDefinition
GO:0006869lipid transport
Vocabulary: Molecular Function
TermDefinition
GO:0005319lipid transporter activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
molecular_function GO:0005319 lipid transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001747Lipid transport protein, N-terminalSMARTSM00638lpd_ncoord: 44..596
e-value: 2.5E-14
score: 63.6
IPR001747Lipid transport protein, N-terminalPFAMPF01347Vitellogenin_Ncoord: 44..594
e-value: 5.0E-67
score: 226.6
IPR001747Lipid transport protein, N-terminalPROSITEPS51211VITELLOGENINcoord: 44..666
score: 21.485
IPR015255Vitellinogen, open beta-sheetSMARTSM01169DUF1943_3coord: 631..931
e-value: 2.0E-61
score: 220.0
IPR015255Vitellinogen, open beta-sheetPFAMPF09172DUF1943coord: 631..924
e-value: 3.9E-59
score: 200.3
IPR009454Lipid transport, open beta-sheetPFAMPF06448DUF1081coord: 956..1031
e-value: 9.7E-9
score: 35.5
IPR015816Vitellinogen, beta-sheet N-terminalGENE3D2.30.230.10coord: 43..289
e-value: 6.8E-47
score: 159.4
NoneNo IPR availableGENE3D1.25.10.20coord: 290..626
e-value: 3.3E-32
score: 111.4
NoneNo IPR availableGENE3D2.20.80.10coord: 788..1008
e-value: 1.3E-39
score: 135.5
IPR015817Vitellinogen, open beta-sheet, subdomain 1GENE3D2.20.50.20coord: 629..775
e-value: 2.2E-18
score: 66.1
IPR015819Lipid transport protein, beta-sheet shellSUPERFAMILY56968Lipovitellin-phosvitin complex; beta-sheet shell regionscoord: 43..291
IPR015819Lipid transport protein, beta-sheet shellSUPERFAMILY56968Lipovitellin-phosvitin complex; beta-sheet shell regionscoord: 631..1008
IPR011030Vitellinogen, superhelicalSUPERFAMILY48431Lipovitellin-phosvitin complex, superhelical domaincoord: 299..617

Blast
BLAST of TCONS_00009843-protein vs. Swiss-Prot (Human)
Match: APOB (Apolipoprotein B-100 OS=Homo sapiens GN=APOB PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 4.705e-56
Identity = 252/1011 (24.93%), Postives = 443/1011 (43.82%), Query Frame = 0
Query:   42 SRFNQGKAYSYDYAGETVSNIEGASIQSTGMRIKSRVLITPLQECKFAMSLSNTEL-SLKSKNQD----FTKSRDSNLLAGDLQKYELLFTMNGNKIETLVAHDNEPTNILNIKRGILSILQFDQDQTTEKD------VNGICSS--TIKKEPDNTFTET---KKLHECKERAQNEYGVQAASFQTESAIKPL----DSTSKCNFVM--KGNIIKSVECNEKHIFRPFSAGYESASGAMTFVKQSMRF-NGPTAALRINLNAGSYNKQSTLVFDHEKEELKSTKALSAT--AESIMESLVSKKSLS-AQQN--SAHEFTALVMALRKMNQKAMTPIWDQYFECKSCSEDLKSVYRQYLLDAIAYCGTSTCVSFVRDVIVNGEMQGERVNMFLQSIALVADTSKDMIRDVLEIVKKQPTRQAYLTLGTLMNRHCTKTPKDCDFAQNNPVSIAE-----SYLEKKLGKNCDGQENYERVEELLMVLKAMGNA--RRPARVRSTLLKCAENSKHA-NITHSVFHAFKSMPCSDNLFTDEILKFIKNQEIDP-EKRIHAFRAAVSCPSEYVLERLVATLEKEPSKQVASYMWTTFSNIMESNSVEQANARELLKKITKTIPLKVVDLPHHQYSKFFE--KTL---GVQDAGVTAEGQLIFHPDGYLPRTAMFNLKGNLLG-NSIDLFESMVYVEGAEDMIGELVGIDGLFSKDF---LYEVFNSSMTMDKLKEMYYNH----QDQKREVKMT-GRMNKIHNQVNMKPTK--PTAHINIKVMGQEVRVFSYDDLYWLIDEIDN-----MNVIQLLTNAATGGHKT-FTKSLMFLELTHVVPTGMGLPLKMKLTGSTVASLELDGKFDIRNMFWGPGSIHVKGSIKPSAVVELSGQMG-IDSVYASSGIFVNTSMFTSNELKGNVIYQNGKILKINLDTPEEPITLFNVSSTPFMYLNEESNLIQG-TERRISPDYCLKSKMIGYGICTSVRIPFAFREYEAPYFPLSGPAHYGVKL 991
            +RF   + Y+Y+Y  E+ S + G +   +  RI  +V +   Q C F +  S   L  +   N +      K+++S   A  + +YEL   +   K   L    +EPT ILNIKRGI+S L    +    K       V G CS+  T+K    N  TE    + L +C        G+   +   +   +PL     S+  C + +  K   +    C E+H+F PFS  Y++  G +  V Q+++  + P    R     G   K+  L F+       STK+ S    AE+++++L   K L+ ++QN   A+ F  LV  LR ++ +A+T +  Q  E  S             L A+  CG   C + +   +         +++    +AL+ + S   +R++  + + Q +R     L   +N          ++ + NP    E     +YL +++  +C G E+Y  +  +L V+  MG    +    ++S++LKC +++K +  I  +   A + M   D     E+L      +  P +KR+ A+   +  PS+  + ++V  L  E ++QV +++ +  +NI+ S  ++  + ++L+K+  K   L  V +   ++S+ ++  K++    +  A    EG LIF P+ YLP+ +M        G  S DL E  +  +G E  +  L G  G F       LY V  +    D + ++  +H    +D K E  M  G M  +   +    +K  P A   ++++G+E+   S  DL  L   +         + Q++      G K  F    +F+E    +PTG GL L++  +G      +   K ++ NM         +   KPS  VE    MG I   +A SG+ +NT+ F  + L+ +V  + GK LK  + +P+ P+ L +  +T  +    ++ +I    E R S   C K    G   CTS     A     A Y+PL+G     ++L
Sbjct:   44 TRFKHLRKYTYNYEAESSSGVPGTADSRSATRINCKVELEVPQLCSFILKTSQCTLKEVYGFNPEGKALLKKTKNSEEFAAAMSRYELKLAIPEGKQVFLYPEKDEPTYILNIKRGIISALLVPPETEEAKQVLFLDTVYGNCSTHFTVKTRKGNVATEISTERDLGQCDRFKPIRTGISPLAL-IKGMTRPLSTLISSSQSCQYTLDAKRKHVAEAICKEQHLFLPFS--YKNKYGMVAQVTQTLKLEDTPKINSRF---FGEGTKKMGLAFE-------STKSTSPPKQAEAVLKTLQELKKLTISEQNIQRANLFNKLVTELRGLSDEAVTSLLPQLIEVSSP----------ITLQALVQCGQPQCSTHILQWLKRVHANPLLIDVVTYLVALIPEPSAQQLREIFNMARDQRSRATLYALSHAVN----------NYHKTNPTGTQELLDIANYLMEQIQDDCTGDEDYTYL--ILRVIGNMGQTMEQLTPELKSSILKCVQSTKPSLMIQKAAIQALRKMEPKDK--DQEVLLQTFLDDASPGDKRLAAYLMLMRSPSQADINKIVQILPWEQNEQVKNFVASHIANILNSEELDIQDLKKLVKEALKESQLPTV-MDFRKFSRNYQLYKSVSLPSLDPASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWV--NGQVPDGVSKVLVDHFGYTKDDKHEQDMVNGIMLSVEKLIKDLKSKEVPEARAYLRILGEELGFASLHDLQLLGKLLLMGARTLQGIPQMIGEVIRKGSKNDFFLHYIFMENAFELPTGAGLQLQISSSGVIAPGAKAGVKLEVANM-------QAELVAKPSVSVEFVTNMGIIIPDFARSGVQMNTNFFHESGLEAHVALKAGK-LKFIIPSPKRPVKLLSGGNTLHLVSTTKTEVIPPLIENRQSWSVC-KQVFPGLNYCTSGAYSNASSTDSASYYPLTGDTRLELEL 1005          
The following BLAST results are available for this feature:
BLAST of TCONS_00009843-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APOB4.705e-5624.93Apolipoprotein B-100 OS=Homo sapiens GN=APOB PE=1 ... [more]
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