TCONS_00009922-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009922-protein
Unique NameTCONS_00009922-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009922-protein ID=TCONS_00009922-protein|Name=TCONS_00009922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MPLPIAPAAPTNTGMTIQKPLEPITNKPPLKSPHGGERRYETSLGILTKR
FVSLLRSSTNGILDLNNAAEILDVQKRRIYDITNVLEGIGVIEKNSKNNI
KWVGAKHLEKTDETNSPQEEAVIGAKLLTLHQEISDLRLAESRLDELIED
CQGEMKHCSAAKHVNKHSYVTYQDIRGVQDFNDKTVIAIKAPPETKLEVP
DPAESIQIWLKSNNGPIDVYLCPDGNKENVPPGVKVEDEDPCTSDTASLC
SEPPSPPATCSSRTLSQSSSGCFDDDHLSYSVDATLSSMNSETSRVKLET
DELFSGDVRTDISISPLIPLEPNFKAEDYLFSLDSSEGIADLFDVDSFL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005565XLOC_005565Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009922TCONS_00009922Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003316E2F_WHTH_DNA-bd_dom
IPR032198E2F_CC-MB
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005667transcription factor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 130..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..256
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableSUPERFAMILY144074E2F-DP heterodimerization regioncoord: 128..224
IPR003316E2F/DP family, winged-helix DNA-binding domainSMARTSM01372E2F_TDP_2coord: 39..104
e-value: 8.7E-34
score: 128.2
IPR003316E2F/DP family, winged-helix DNA-binding domainPFAMPF02319E2F_TDPcoord: 41..104
e-value: 6.2E-24
score: 83.7
IPR032198E2F transcription factor, CC-MB domainPFAMPF16421E2F_CC-MBcoord: 130..223
e-value: 8.0E-32
score: 109.4
IPR032198E2F transcription factor, CC-MB domainCDDcd14660E2F_DDcoord: 125..224
e-value: 1.07352E-44
score: 149.59
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 33..107
e-value: 2.9E-25
score: 87.7
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 39..103

Blast
[Close]
BLAST of TCONS_00009922-protein vs. Swiss-Prot (Human)
Match: E2F2 (Transcription factor E2F2 OS=Homo sapiens GN=E2F2 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.780e-72
Identity = 147/353 (41.64%), Postives = 198/353 (56.09%), Query Frame = 0 
Query:    4 PIAPAAPTNTGMTIQKPLEPITNKPPLKSPHGGERRYETSLGILTKRFVSLLRSSTNGILDLNNAAEILDVQKRRIYDITNVLEGIGVIEKNSKNNIKWVGAKHLEKTDETNSPQEEAVIGAKLLTLHQEISDLRLAESRLDELIEDCQGEMKHCSAAKHVNKHSYVTYQDIRGVQDFNDKTVIAIKAPPETKLEVPDPAE-SIQIWLKSNNGPIDVYLCPDGNKENVPPGVKVEDEDPCTSDTASLCSEPPS--PPATCSSRTLSQSSSGCFDDDHLSYSVDATLSSMNSETSRVKLET---------DELFSGDVRTDISISPLIPLEPNFKAEDYLFSLDSSEGIADLFD 344
            P+ P  PT  G  I+    P    P  KSP G + RY+TSLG+LTK+F+ LL  S +G+LDLN AAE+LDVQKRRIYDITNVLEGI +I K +KNNI+WVG    E        Q+          L QE+ +L   E  LD+LI+ C    KH +  K   + +YVTYQDIR V +F ++TVIA+KAPP+T+LEVPD  E ++QI+LKS  GPI+VYLCP+  +E   P      E+P  S T++LC  P S  P ++     +  ++S                S +  E +   LE          D+  S  +      SPLI   P+   +DYL+ L++ EGI+DLFD
Sbjct:   97 PVVPEFPTPKGKCIRVDGLPSPKTP--KSP-GEKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQWVGRGMFEDPTRPGKQQQ----------LGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYLCPEEVQEPDSPS-----EEPLPS-TSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTPQQAPPPPSLVPLEATDSLLELPHPLLQQTEDQFLSPTLACS---SPLISFSPSLDQDDYLWGLEAGEGISDLFD 427
The following BLAST results are available for this feature:
BLAST of TCONS_00009922-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E2F22.780e-7241.64Transcription factor E2F2 OS=Homo sapiens GN=E2F2 ... [more]
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