TCONS_00009977-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00009977-protein
Unique Name	TCONS_00009977-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1028

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00009977-protein ID=TCONS_00009977-protein|Name=TCONS_00009977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1028bp
MKNTTLVIIILYIVQLLCLIPFTYSINDAEYIKRGCDTNIRLKDLDNVDF
IIGGVFPSTYYFPKTDSYETNYAAVTWVSAMLYAMSEINKNTTILPGIRL
GYDIYDSCDSVELGARYALNFMVNKNYYKDGNTKLIGVVGGALSDISALL
NSVISSEYTPQISYSSTSEALSESWRYRSFLRTVPSDKHLAAAIIDLIRY
FKWTYVSAFAIDDAYGRVGLEELQISAKTAGVCLEHALTFNEKLKERELS
EIVGHLKELTLNTTHIVILWAPYKISEKIMGVARAANISEWSLVFIGPHI
WTDTMHERENFYYRTIVTKLKQPVLNDSFIKDMQYSFDINWDNPWIRKIF
ERSMLCPEKVLKSKDKPPMCMFRLPERMASAVISGTRSKYPQVIAAVYAI
ALGLHEYLGCTKTACPKWDPEIDFKKLFEIIKKCDFILPPGSEGYHISFD
QKTGEIVNKEYIFNMHYQTADKAVGTWFGPNNIDASPNAREASFWYEGGI
PSGQCSQDCKPGSYKSVDSSSSCCWTCPSCGADTISSTINQEKCVPCEAS
YEVASSNQTYCIKLREIRIKLDNYIGLLLIASCIVGVLIVLFVILVFVRH
WHTPVVKSSSREISIIQLLSLMLLFCLPLLYFFPLSPLFCLFRTLIFGFL
FTTVVAIILVKTYRLIRVFSNRFTKVSHFLHTNYQILFIYVLVVFELIAV
LLWNWNFQPAVETDIYKSKLIYYLKCDYYQTVIFWIVMLYIFILVIVSGY
YAFRARKLPENYNEAQYISLTMFTVIVVWVAYVPLFFSLDPYSNSIAFLF
QNFICTLAVTFIMYAYKVYIILFNPKLNSPEHARQQHKDHFLDSLHRDQW
KRGQTPPEQEPFRPRLASLPSLPVAVHQPSVFDDPDGGEPGSRRGTLHKG
ERQRLIDRLQPRRASFSSMSQLEKINHHKSYETFNPGLDVLRREIRKSQS
TSFLLDASLSVEMQQQPPRSATSHNVLSHFSGLKKVFSNVSIHKLLDHHS
HHHHHHHHEKVTEKTSLLSSSGELNTKL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005602	XLOC_005602	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00009977	TCONS_00009977	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR001828	ANF_lig-bd_rcpt
IPR011500	GPCR_3_9-Cys_dom
IPR017978	GPCR_3_C
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 74..89 score: 39.45 coord: 603..625 score: 45.65 coord: 138..164 score: 32.99 coord: 648..669 score: 34.23 coord: 89..108 score: 50.16 coord: 206..223 score: 39.06 coord: 190..206 score: 40.99 coord: 763..784 score: 45.03 coord: 171..190 score: 47.81 coord: 740..763 score: 42.45 coord: 47..59 score: 39.9 coord: 685..708 score: 16.8
None	No IPR available	GENE3D	3.40.50.2300		coord: 48..458 e-value: 1.8E-50 score: 171.3
None	No IPR available	GENE3D	2.10.50.10		coord: 500..727 e-value: 1.4E-5 score: 24.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 879..903
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 998..1028
None	No IPR available	CDD	cd06350	PBP1_GPCR_family_C_like	coord: 51..306 e-value: 4.5016E-57 score: 200.29
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 77..466 e-value: 4.1E-51 score: 174.1
IPR011500	GPCR, family 3, nine cysteines domain	PFAM	PF07562	NCD3G	coord: 501..549 e-value: 4.6E-9 score: 36.0
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 588..820 e-value: 4.5E-40 score: 137.8
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 575..837 score: 41.805
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 49..481

Blast

[Close]

BLAST of TCONS_00009977-protein vs. Swiss-Prot (Human)
Match: GRM3 (Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 4.565e-85
Identity = 231/855 (27.02%), Postives = 389/855 (45.50%), Query Frame = 0

Query:   22 FTYSINDAEYIKRGCDTNIRLKDLDNVDFIIGGVFPSTYYFPKTDSYE--TNYAAVTWVSAMLYAMSEINKNTTILPGIRLGYDIYDSCDSVELGARYALNFM------VNKNYY--KDG------NTKLI--GVVGGALSDISALLNSVISSEYTPQISYSSTSEALSESWRYRSFLRTVPSDKHLAAAIIDLIRYFKWTYVSAFAIDDAYGRVGLEELQISAKTAGVCLEHALTFNEKLKERELSEIVGHLKELTLNTTHIVILWAPYKISEKIMGVARAANISEWSLVFIGPHIWTDTMHERENFYYRTIVTKL-KQPVLN-DSFIKDMQ-YSFDINWDNPWIRKIFERSMLCPEKVLKSKDKPPMCMFRLPERMASAVISGTRSKYPQ------VIAAVYAIALGLHEYLGCTKTACPKWDPEIDFKKLFEIIK-------KCDFILP--PGSEGYHISFDQKTGEIVNKEYIFNMHYQTADKA---VGTWFGPNNIDASPNAREASFWYEGGIPSGQCSQDCKPGSYKSVDSSSSCCWTCPSCGADTISSTINQEKCVPCEASYEVASSNQTYCIKLREIRIKLDNYIGLLLIASCIVGVLIVLFVILVFVRHWHTPVVKSSSREISIIQLLSLMLLFCLPLLYFFPLSPLFCLFRTLIFGFLFTTVVAIILVKTYRLIRVFSN--RFTKVSHFLHTNYQILFIYVLVVFELIAVLLWNWNFQPAVET-DIYKSKLIYYLKCDYYQTVIFWIVMLYIFILVIVSGYYAFRARKLPENYNEAQYISLTMFTVIVVWVAYVPLFF--SLDPYSNSIAFLFQNFICTLAVTFIMYAYKVYIILFNPKLNSPEH 832
            F  S+ D  +++R     I+++     D ++GG+FP       T+          +  + AML+A+ EINK+  +LPG++LG  I D+C         +L F+      V++  Y   DG      N  L+  GV+GG+ S +S  + +++     PQISY+STS  LS+  RY  F RTVP D + A A+ +++R+F WTYVS  A +  YG  G+E  +  A+   +C+  A         +    ++  L  L      +V+L+     S +++  A  AN S   +   G       +   E+  Y  I  +L  QPV   D + + +  Y+   N  NPW R  +E+   C    L++K        R   R+    ++   S Y Q      V+ AVYA+A  LH+     +T CP      D  K+ +  K       K +F  P  P  +   I      G+ + +  +FN        +   VG W    ++D +     +  W    +P+ QCS  C P   K++     CCW C  C  +      ++  C+ C  S +  +++ T C  L E  I+ ++   +  +    +G +    V+ VF++H +TP+VK+S RE+  I L  + L +C+   +    SP+ C  R L  G  F    + +L KT  + R+F       +   F+  + Q+     L++ +++ V +W     P      + + +    LKC+   + +  I + Y  ILVI+   YAF+ RK PEN+NEA++I  TM+T  ++W+A++P+F+  S D    +        +    V   ++A KV+IILF P+ N   H
Sbjct:   19 FLLSLGDHNFLRR----EIKIEG----DLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIREL--LQKPNARVVVLFMRSDDSRELIAAASRANASFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYN---NHRNPWFRDFWEQKFQCS---LQNK--------RNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKM---QRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNVGGKYSYLKVGHWAETLSLDVN-----SIHWSRNSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPC--EPYEYLADEFTCMDC-GSGQWPTADLTGCYDLPEDYIRWEDAWAIGPVTIACLGFMCTCMVVTVFIKHNNTPLVKASGRELCYILLFGVGLSYCMTFFFIAKPSPVICALRRLGLGSSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVSVWLILEAPGTRRYTLAEKRETVILKCNVKDSSML-ISLTYDVILVILCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGFVVLGCLFAPKVHIILFQPQKNVVTH 837

The following BLAST results are available for this feature:

BLAST of TCONS_00009977-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00009977-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM3	4.565e-85	27.02	Metabotropic glutamate receptor 3 OS=Homo sapiens ...	[more]

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TCONS_00009977-protein (polypeptide) - C. hemisphaerica