TCONS_00010526-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010526-protein
Unique NameTCONS_00010526-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010526-protein ID=TCONS_00010526-protein|Name=TCONS_00010526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp
MPESEFSNPIAPLHHHQDHEEEEDIQKLTNNDFRSLLMTPRDNPKAPPPK
RPGASKDFSEADDAHAKRRKKKLYYAKLKQQEEERQKELASKYRDRATER
REGKNTDYAQTENSDLAKTAEYRAVAPTADQANNAAERRRLAIQESKFLG
GDMEHTHLVKGLDFALLQKVRSEIAMIETEEDAVKDEKKPAKDKTEEKKP
APKAQKAQDVEFVSALGRKIHKAAMNTKPPLRNELFLPGRMAYVFTLDDE
EESEIPTTTIRSKADCPTLEAETSLTTNDIVINKLTQILSYLRHGVRASK
KQKKREKELIRAGKDPRAEESIYADLVEQSSGFGSFGSSSSKDQKKSKYF
SDYNKSDHRHDRDREDSSRYDKKKTDVSQFVRNINEKYGSKNESSSSSSS
SKKRSSSSKSKKTEVDSYAECYPGMAEMNDAVDDSDDDADYTKMDMGNKK
GPVKRWDFENEDEYNSYMEKREAMPKAAFQFGIKMNEGRKTRSRPGAMSE
KQKLDREWQQISNIISKRKSGDTSKSSGGKRSKDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005905XLOC_005905Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010526TCONS_00010526Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012916RED_N
IPR012492RED_C
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..535
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..454
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..119
IPR012916RED-like, N-terminalPFAMPF07808RED_Ncoord: 70..305
e-value: 4.3E-88
score: 294.8
IPR012492Protein RED, C-terminalPFAMPF07807RED_Ccoord: 418..526
e-value: 5.4E-50
score: 168.5
IPR012492Protein RED, C-terminalPRODOMPD311621coord: 447..515
e-value: 2.0E-19
score: 240.0

Blast
[Close]
BLAST of TCONS_00010526-protein vs. Swiss-Prot (Human)
Match: RED (Protein Red OS=Homo sapiens GN=IK PE=1 SV=3)

HSP 1 Score: 313.538 bits (802), Expect = 2.844e-100
Identity = 174/304 (57.24%), Postives = 216/304 (71.05%), Query Frame = 0 
Query:    1 MPESE---FSNPIAPLHHHQDHEEEEDIQKLTNNDFRSLLMTPRDNPKAPPPKRP---GASKDFSEADDAHAKRRKKKLYYAKLKQQEEERQKELASKYRDRATERREGKNTDYAQTENSDLAKTAEYRAVAPTADQANNAAERRRLAIQESKFLGGDMEHTHLVKGLDFALLQKVRSEIAMIETEEDAVKDEKKPAKDKTEEKKPAPKAQKAQDVEFVSALGRKIHKAAMNTKPPLRNELFLPGRMAYVFTLDDE-EESEIPTTTIRSKADCPTLEAETSLTTNDIVINKLTQILSYLRHGVR 297
            MPE +   FSNP+AP  H  D        KLTN DFR LLMTPR  P + PP +       ++++E +D  A+RRKKK YYAKL+QQE ER++ELA KYRDRA ERR+G N DY +TE   ++ TA YRAV PTA+   +AAE+RR  IQESKFLGGDMEHTHLVKGLDFALLQKVR+EIA    E++  +  +KP K+  +++ P  K      +EF + LGR +++    +K   RNELFLPGRMAYV  LDDE  +++IPTT IRSKADCPT+EA+T+LTTNDIVI+KLTQILSYLR G R
Sbjct:    1 MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEMPREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRDRAKERRDGVNKDYEETEL--ISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIA--SKEKEEEELMEKPQKETKKDEDPENK------IEFKTRLGRNVYRMLFKSKAYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGTR 294
The following BLAST results are available for this feature:
BLAST of TCONS_00010526-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RED2.844e-10057.24Protein Red OS=Homo sapiens GN=IK PE=1 SV=3[more]
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