TCONS_00010788-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010788-protein
Unique NameTCONS_00010788-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010788-protein ID=TCONS_00010788-protein|Name=TCONS_00010788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MATERIFIKDLVVGPSKKAIVGLVIAKFDKRSFPDKKEYGVMKSLMNFTI
RDTPEDFINVACWGSENFISNLSDSFGIGSVVQLSDFLVRTKGNTENEEK
YNPSTQSAFNISVSESYTKLNAYTGEDHDHIMTLSNYPIRDYDDYYTLGD
ILCNGHNLNGSMVNIMACVREVGEIKEFVSKAGKNIVKRELVLFDEHCNS
FPLIIWDREVASSVNQWMENPIVLFLVDVKVQFEEFRQKMTGSVTAKTII
TVYPDTPQAHHLAAYAQNNGGLMMNPFEGNNDCVDDINDVYTIAEIEEKL
NGNMDEMSMFSQPFSGIVYATVSHFDLDKESRNYVTIRCKLCKRRVPNET
MICNNISCNNQSRDQMTSSLEFRISLSDHTMGLDNFLMVRDVAEKTLQCN
VEDFMTMEDTTKTTMKWKFLFERFKVYFKAYPAGQERKKPIVNILDLGNP
NDFVF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006060XLOC_006060Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010788TCONS_00010788Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031657REPA_OB_2
IPR012340NA-bd_OB-fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031657Replication protein A, OB domainPFAMPF16900REPA_OB_2coord: 159..245
e-value: 7.5E-8
score: 32.1
NoneNo IPR availableGENE3D2.40.50.140coord: 6..119
e-value: 3.0E-8
score: 33.2
NoneNo IPR availableGENE3D2.40.50.140coord: 144..272
e-value: 1.1E-15
score: 56.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 9..124
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 144..269

Blast
[Close]
BLAST of TCONS_00010788-protein vs. Swiss-Prot (Human)
Match: MEIOB (Meiosis-specific with OB domain-containing protein OS=Homo sapiens GN=MEIOB PE=2 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.831e-75
Identity = 144/405 (35.56%), Postives = 229/405 (56.54%), Query Frame = 0 
Query:    5 RIF--IKDLVVGPSKKAIVGLVIAKFDKRSFPDKKEYGVMKSLMNFTIRDTPEDFINVACWGSENFISNLSDSFGIGSVVQLSDFLVRTKGNTENEEKYNPSTQSAFNISVSESYTKLNAYTGEDHD-HIMTLSNYPIRDYDDYYTLGDILCNGHNLNGSMVNIMACVREVGEIKEFVSKAGKNIVKRELVLFDEHCNSFPLIIWDREVASSVNQWMENPIVLFLVDVKVQFEEFRQKMTGSVTAKTIITVYPDTPQAHHLAAYAQNNGGLMMNPFEGNNDCVDDIN-----DVYTIAEIEEKLNGNMDEMSMFSQPFSGIVYATVSHFDLDKESRNYVTIRCKLCKRRVPNETMICNNISCNNQSRDQMTSSLEFR--ISLSDHTMGLDNFLMVRDVAEKTLQC 399
            RIF  + DL    +   ++G+VI K D + FPD+K  G  +   +FTIRD+P  F+N A WG+E++I +LSDSF +G  V + + L++ K   E EEK++P+T S   + +SE+++ +   +  + D  +++L + P+++  DYY+LGDI+ NGH+LNG ++N++A V+ VGE K F +   +   + E+ L+DE  +SF +  WD E       WM    V+F  DV++ F++FR  MT +V +KTIIT  PD P+A+ L  + + N    +   E ++   + IN     DVYT+    E+L G   +    + P  GI+YA +S  ++D E+   V  RC  C   V   + +C   +CN  S D  +  L F   I L+DHT  L +  +   VAE+TL C
Sbjct:    8 RIFTTLSDLQTNMANLKVIGIVIGKTDVKGFPDRKNIGSERYTFSFTIRDSPAHFVNAASWGNEDYIKSLSDSFRVGDCVIIENPLIQRK-EIEREEKFSPATPSNCKLLLSENHSTVKVCSSYEVDTKLLSLIHLPVKESHDYYSLGDIVANGHSLNGRIINVLAAVKSVGEPKYFTTSDRRKGQRCEVRLYDETESSFAMTCWDNESILLAQSWMPRETVIFASDVRINFDKFRNCMTATVISKTIITTNPDIPEANILLNFIRENKETNVLDDEIDSYFKESINLSTIVDVYTV----EQLKGKALKNEGKADPSYGILYAYISTLNIDDETTKVVRNRCSSCGYIVNEASNMCT--TCNKNSLDFKSVFLSFHVLIDLTDHTGTLHSCSLTGSVAEETLGC 405
The following BLAST results are available for this feature:
BLAST of TCONS_00010788-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEIOB1.831e-7535.56Meiosis-specific with OB domain-containing protein... [more]
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